Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M21
         (923 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104916-1|AAI04917.1|  852|Homo sapiens SHROOM1 protein protein.      31   7.8  
BC104914-1|AAI04915.1|  852|Homo sapiens SHROOM1 protein protein.      31   7.8  
AF314142-1|AAM15526.1|  847|Homo sapiens apical protein 2 protein.     31   7.8  
AB075840-1|BAB85546.1|  871|Homo sapiens KIAA1960 protein protein.     31   7.8  

>BC104916-1|AAI04917.1|  852|Homo sapiens SHROOM1 protein protein.
          Length = 852

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 210 GPISXGPXKXXFETPPGLXXRGPXGPPSQXCWGRSRXNAGXXGTVPL 70
           GP++    K  F  P  L   G  G P++ C G +  ++G  G  PL
Sbjct: 212 GPLANQQRKWCFSEPGKLDRVGRGGGPARECLGEACSSSGLPGPEPL 258


>BC104914-1|AAI04915.1|  852|Homo sapiens SHROOM1 protein protein.
          Length = 852

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 210 GPISXGPXKXXFETPPGLXXRGPXGPPSQXCWGRSRXNAGXXGTVPL 70
           GP++    K  F  P  L   G  G P++ C G +  ++G  G  PL
Sbjct: 212 GPLANQQRKWCFSEPGKLDRVGRGGGPARECLGEACSSSGLPGPEPL 258


>AF314142-1|AAM15526.1|  847|Homo sapiens apical protein 2 protein.
          Length = 847

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 210 GPISXGPXKXXFETPPGLXXRGPXGPPSQXCWGRSRXNAGXXGTVPL 70
           GP++    K  F  P  L   G  G P++ C G +  ++G  G  PL
Sbjct: 212 GPLANQQRKWCFSEPGKLDRVGRGGGPARECLGEACSSSGLPGPEPL 258


>AB075840-1|BAB85546.1|  871|Homo sapiens KIAA1960 protein protein.
          Length = 871

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 210 GPISXGPXKXXFETPPGLXXRGPXGPPSQXCWGRSRXNAGXXGTVPL 70
           GP++    K  F  P  L   G  G P++ C G +  ++G  G  PL
Sbjct: 231 GPLANQQRKWCFSEPGKLDRVGRGGGPARECLGEACSSSGLPGPEPL 277


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,122,343
Number of Sequences: 237096
Number of extensions: 1706309
Number of successful extensions: 13735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12200
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)