Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M16
         (837 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r...    42   0.025
UniRef50_A7LH31 Cluster: Chordin; n=2; Strongylocentrotus purpur...    33   8.9  

>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
           glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
           proline-and glutamine-rich - Bombyx mori (Silk moth)
          Length = 641

 Score = 41.5 bits (93), Expect = 0.025
 Identities = 19/26 (73%), Positives = 19/26 (73%)
 Frame = +2

Query: 305 SRFEHNRPXXXXXXXRPSNEKATSQS 382
           SRFEHNRP       RPSNEKATSQS
Sbjct: 37  SRFEHNRPQQGQGGQRPSNEKATSQS 62


>UniRef50_A7LH31 Cluster: Chordin; n=2; Strongylocentrotus
           purpuratus|Rep: Chordin - Strongylocentrotus purpuratus
           (Purple sea urchin)
          Length = 969

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 189 CVECKCKP*ITSAIKEDLVDHRNLNGKEVVVVITEDFVIRD 311
           CV C+C+P +T  I    +  RN+   ++     ED VI+D
Sbjct: 105 CVVCECRPEVTDGILSGKISCRNIKCPDITCPNDEDPVIKD 145


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 416,056,213
Number of Sequences: 1657284
Number of extensions: 4962876
Number of successful extensions: 9647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9646
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)