Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M16
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    33   0.33 
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    28   7.2  

>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 371 LPSHY*AVDLLVPVEVYY-AQISNYEILCYYHDDLLAVEVAVVHQILFDCRSYSWLAFAF 195
           L  HY    LLV ++ +   +  NYE+L  +HDDL   ++  +     D R+Y   AF+F
Sbjct: 622 LVEHYGHRILLVDLKDFQLTRFQNYEMLKIFHDDLFFSDIKKMPNRWEDNRAYQ--AFSF 679

Query: 194 YATRTFL 174
            A   FL
Sbjct: 680 LAQLQFL 686


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 243 VDHRNLNGKEVVVVITEDFVIRDLSIIDLNRD 338
           VDH ++  + +  +I+  F++  LS++D + D
Sbjct: 144 VDHLSIRAQYIAALISAPFIVSSLSLVDSDND 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,649,196
Number of Sequences: 27780
Number of extensions: 122466
Number of successful extensions: 278
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)