Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M14
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...   126   4e-30
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    51   2e-07
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    42   2e-04
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    30   0.53 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   2.8  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   6.5  

>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score =  126 bits (304), Expect = 4e-30
 Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
 Frame = +3

Query: 96  LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 275
           +Q R+ +Y   H + M+  + A M+ T+LY KRFFPYYV   +AG+D +GKG +YS+DP+
Sbjct: 72  IQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPV 131

Query: 276 GHCARHNFRAGGSAAAQLQPLLDNQIGLKNM--------QNVTEAPLPREKALALLKDVF 431
           G   R   RAGGSAA  + P LDNQ+ L N         +      L  E+A+ +  D F
Sbjct: 132 GSYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEEAMKITTDAF 191

Query: 432 ISAAERDIYTGDSIYILIITASGIQEEKFELRKD 533
            SA ER I  GDS+ + IIT  G++     L+KD
Sbjct: 192 TSAGERHIEVGDSVLVKIITKEGVETRIIPLKKD 225


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
 Frame = +3

Query: 93  LLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDP 272
           L + ++ +Y+    + +     A ++S+ LY KRF PY+   V+AG+ +D    +  +D 
Sbjct: 66  LFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDS 125

Query: 273 IGHCA--RHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 446
           IG C     +F   G+A  QL  +          ++V E  L  +     +    ++A +
Sbjct: 126 IG-CIDFAEDFIVSGTATEQLYGM---------CESVYEPNLEPDDLFETISQALLNAQD 175

Query: 447 RDIYTGDSIYILIITASGIQEEKFELRKD 533
           RD  +G    + +ITA    +   + R+D
Sbjct: 176 RDCISGWGCVVYVITADKCIKRLVKGRQD 204


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 36/144 (25%), Positives = 62/144 (43%)
 Frame = +3

Query: 93  LLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDP 272
           LL+  + MY  +     +    A + S M Y  +        ++AG D    G VYS   
Sbjct: 82  LLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGGDVYSIPL 140

Query: 273 IGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERD 452
            G   +     GGS +A +    D        +N+T+     E+A+  LK+    A ERD
Sbjct: 141 GGSLHKQPLAIGGSGSAFIYGFCDANF----RENMTQ-----EEAVEFLKNAVALAMERD 191

Query: 453 IYTGDSIYILIITASGIQEEKFEL 524
             +G +I ++I+   G++ + F +
Sbjct: 192 GSSGGTIRMVILNKDGMERKFFAI 215


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 23/96 (23%), Positives = 46/96 (47%)
 Frame = +3

Query: 300 RAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIYTGDSIYI 479
           +AG S A +   LL+NQI     +N+T +  P +    ++K++ ++A+E       ++  
Sbjct: 540 KAGHSEAIERLALLENQIQEPEPENITSSQYPNQD---VIKEIPVTASETSPPHAPAVSS 596

Query: 480 LIITASGIQEEKFELRKD*FVTKKSNKYFIQENNFV 587
             +T S     + ++ K     K S K+ I+ N  +
Sbjct: 597 TPVT-SAPPVSQTKVTKVSVPKKTSKKFLIKHNKCI 631


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 109 CRCTNTSITNL*PLRQSHRCSQLCCI 186
           CRCT T   N+  L Q  + + +CCI
Sbjct: 743 CRCTPTQKANMTRLIQEKKQASVCCI 768


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 264 YDPIGHCARHNFRAGGSAAAQLQPLLDNQIG----LKNMQNVTEAPLPREKALALL 419
           Y+P+ + A H FR G S  + L+ +  N  G    ++         +P +K +ALL
Sbjct: 332 YEPLFNTASHGFRPGRSCHSALRSIFTNFKGCTWWIEGDIKACFDSIPHDKLIALL 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,001
Number of Sequences: 5004
Number of extensions: 51560
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)