Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M14
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...   126   3e-29
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...   126   3e-29
U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    47   2e-05
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    38   0.010
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    32   0.66 
Z73423-1|CAA97776.2|  492|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U23528-2|AAK31387.1|  984|Caenorhabditis elegans Calsyntenin/alc...    28   8.1  
AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin p...    28   8.1  
AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    28   8.1  

>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score =  126 bits (303), Expect = 3e-29
 Identities = 65/150 (43%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
 Frame = +3

Query: 90  RLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYD 269
           ++LQ+R+  Y  ++   M+    A++LS  LYY+RFFPYY   +LAG+D  GKG V+SYD
Sbjct: 109 KVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYD 168

Query: 270 PIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALLKDVFISAAE 446
           PIG   R  + A G+A   + P LD QIG   +    E P L  ++A++L+KD F  AAE
Sbjct: 169 PIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGAAE 228

Query: 447 RDIYTGDSIYILIITASGIQEEKF-ELRKD 533
           R+I TGD I+++I  A      KF  LR+D
Sbjct: 229 REISTGDKIHLVIAEAGKPVVVKFLPLRED 258


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score =  126 bits (303), Expect = 3e-29
 Identities = 65/150 (43%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
 Frame = +3

Query: 90  RLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYD 269
           ++LQ+R+  Y  ++   M+    A++LS  LYY+RFFPYY   +LAG+D  GKG V+SYD
Sbjct: 109 KVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYD 168

Query: 270 PIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALLKDVFISAAE 446
           PIG   R  + A G+A   + P LD QIG   +    E P L  ++A++L+KD F  AAE
Sbjct: 169 PIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGAAE 228

Query: 447 RDIYTGDSIYILIITASGIQEEKF-ELRKD 533
           R+I TGD I+++I  A      KF  LR+D
Sbjct: 229 REISTGDKIHLVIAEAGKPVVVKFLPLRED 258


>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
 Frame = +3

Query: 105 RMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG-H 281
           R  +YE   N+++    +++M+S + Y  RF  Y+   ++AGLD   K  +   D IG  
Sbjct: 70  RKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCV 129

Query: 282 CARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIYT 461
            A  +F A G+    L  + +N    +NM+       P E   A  + + +S  ERD  +
Sbjct: 130 SAPRDFVAVGTGQEYLLGVCEN-FWRENMK-------PDELFEATAQSI-LSCLERDAAS 180

Query: 462 GDSIYILIITASGIQEEKFELRKD 533
           G    +  IT   +     + R D
Sbjct: 181 GWGAVVYTITKDKVNVSTIKARMD 204


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 39/144 (27%), Positives = 60/144 (41%)
 Frame = +3

Query: 108 MQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCA 287
           + +Y    NK +T    +Q+    LY  R      S ++AG D +  G VY+    G  +
Sbjct: 86  IDVYTMTENKPVTIYRSSQIFRQFLYNYRE-QLSASVLVAGWDEELGGQVYAIPIGGFVS 144

Query: 288 RHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIYTGD 467
           R    A GS +  +Q  LD+Q             L  E+  A++K     A  RD  +G 
Sbjct: 145 RQRSTASGSGSTFVQGFLDSQ---------WRPNLTLEECKAIVKQAVGLATFRDGSSGG 195

Query: 468 SIYILIITASGIQEEKFELRKD*F 539
            + + +I  +G Q E F   K  F
Sbjct: 196 VVRLAVINKAGSQFELFRPDKPGF 219


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 22/87 (25%), Positives = 38/87 (43%)
 Frame = +3

Query: 87  TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 266
           TR++     +YE     S+T  A ++  +  LY  R     V +++AG D  G   ++  
Sbjct: 127 TRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ-IFKV 185

Query: 267 DPIGHCARHNFRAGGSAAAQLQPLLDN 347
           D  G   +    + GS +     +LDN
Sbjct: 186 DSEGDRCQLKVCSVGSGSLNAYGILDN 212


>Z73423-1|CAA97776.2|  492|Caenorhabditis elegans Hypothetical
           protein C03A3.2 protein.
          Length = 492

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = -1

Query: 400 SLGKGASVTFCIFFKPI*LSRSGCSCAAAEPPARKLWRAQCPIGS*LYT----HPLPSLS 233
           +L + A+    I    + LS  G   AAA PPA          G  +Y     H +PSL 
Sbjct: 206 TLSRWAAFILMISLATMQLSSDG---AAAHPPAYNFHGFGSLFGCAVYAFMCHHSIPSLI 262

Query: 232 KPANTLDT*YGKNRL*YNIV 173
            P  T D  +GK  L Y +V
Sbjct: 263 TPMRTKDNVFGKIALVYGVV 282


>U23528-2|AAK31387.1|  984|Caenorhabditis elegans
           Calsyntenin/alcadein homolog protein1, isoform a
           protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 330 QPLLDNQIGLKNMQNVTEAPLPREKAL 410
           +P  D Q+G   +QN+ E  LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833


>AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin
           protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 330 QPLLDNQIGLKNMQNVTEAPLPREKAL 410
           +P  D Q+G   +QN+ E  LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833


>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 263 LRPYRTLCAP*LPRWWFRCCTAATAPRQSNW-LKEYAECNRSSFA*GKGP 409
           LRP+   C P L  ++ RC +   A R ++    EY  C RS +  G  P
Sbjct: 259 LRPHEIECNPILSNFYKRCWSDNPASRPTSADCVEYFRCLRSEYPNGNVP 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,627
Number of Sequences: 27780
Number of extensions: 309360
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)