Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_M13
(931 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 36 0.061
07_01_1201 - 11419851-11419913,11420090-11420311 31 1.3
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44... 31 1.7
01_06_0221 - 27653591-27653724,27654270-27654473,27655216-276553... 29 4.0
12_02_1188 + 26801833-26802225 29 7.0
03_06_0149 - 31987183-31987630,31987813-31987874 29 7.0
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 7.0
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.2
05_04_0142 - 18372751-18373338 28 9.2
01_03_0308 - 14883728-14884120 28 9.2
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 35.5 bits (78), Expect = 0.061
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 716 RHASRREKGGQVSGKRQGRNRRAHEGAFQGETPG 615
R RR GG+V+G+ R+RR GA++GE G
Sbjct: 241 RRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 539 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 685
L PP Q+WR+ PTG + +FP G LP A PA R P
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63
>10_01_0038 +
437738-438122,439215-439501,440111-440375,440687-440784
Length = 344
Score = 30.7 bits (66), Expect = 1.7
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = -3
Query: 653 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 474
R H+ F G G L G + LS R GGG P+TR G G +
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271
Query: 473 TCSFLRYPLILWITVLPPLSELIPLAAA 390
T S R + + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299
>01_06_0221 -
27653591-27653724,27654270-27654473,27655216-27655315,
27655728-27655888,27656846-27656930,27657548-27657614,
27658434-27658541,27658639-27658704,27659341-27659387,
27659497-27659691,27659833-27659877
Length = 403
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 752 YTXENYSVSYEKRHASRREKGGQVSGKRQGRNRRAH 645
+T E++ V YE R RRE GG G G R +
Sbjct: 12 WTFEDFEVYYEVRLGIRREPGGDEDGDGDGGGGRGY 47
>12_02_1188 + 26801833-26802225
Length = 130
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 692 GGQVSGKRQGRNRRAHEGAFQGETPGIFIVLSG 594
GG SGKR AHEG +G P +++V G
Sbjct: 33 GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.7 bits (61), Expect = 7.0
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -3
Query: 806 QXEAVADGVRHTASWSDDYTXENYSVSYEKRHASRREKGGQVSGKRQGRNRRAHEGAFQG 627
+ EAVA + A D E+ + + H R + + +R+GR R AHEG G
Sbjct: 51 EKEAVAAVLAAVAGIVGDALLEDEE-AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
Query: 626 ETP 618
P
Sbjct: 110 AEP 112
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 7.0
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 351 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 506
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>05_04_0142 - 18372751-18373338
Length = 195
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 770 ASWSDDYTXENYSVSYEKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETP 618
AS S T + S R E+GG G++QGR R+A A + P
Sbjct: 41 ASSSYPSTSGSAGSSSSGRRVEEEEQGGGGGGRKQGRRRKAVARAIRERLP 91
>01_03_0308 - 14883728-14884120
Length = 130
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 598 DRTIKIPGVSPWKAPSCALLFRP---CRLPDTCPPFSLREAWR 717
+R +I G + PS A L+R C +CPP E WR
Sbjct: 65 ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREERWR 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,756,644
Number of Sequences: 37544
Number of extensions: 442620
Number of successful extensions: 1317
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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