Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M10
         (942 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q03659 Cluster: HPLC6 protein; n=1; Pseudopleuronectes ...    35   3.4  
UniRef50_Q08ZL8 Cluster: Multi-component Transcriptional regulat...    35   3.4  

>UniRef50_Q03659 Cluster: HPLC6 protein; n=1; Pseudopleuronectes
           americanus|Rep: HPLC6 protein - Pseudopleuronectes
           americanus (Winter flounder) (Pleuronectesamericanus)
          Length = 83

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 482 PLPPXXRPSXXSQ*ARNPEVRPIRRPPLPARWPDXLCXKKPXTPPP 345
           P PP  +     Q  + P + P  +PPLP   P  L    P TPPP
Sbjct: 27  PKPPQQQLPPLPQPPQTPPLTPPLQPPLPPPTPKPLPNSLPPTPPP 72


>UniRef50_Q08ZL8 Cluster: Multi-component Transcriptional regulator,
           Winged helix family, putative; n=1; Stigmatella
           aurantiaca DW4/3-1|Rep: Multi-component Transcriptional
           regulator, Winged helix family, putative - Stigmatella
           aurantiaca DW4/3-1
          Length = 697

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = -2

Query: 482 PLPPXXRPSXXSQ*ARNPEVRPIRRPPLPARWPDXLCXKKPXTPPP 345
           P  P   P   S   R P  R    PPLP R P  L   +P +PPP
Sbjct: 496 PFRPSPPPGVSSPVTRPPIPRTDTLPPLPPRAPPPLTPLRPASPPP 541


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,488,425
Number of Sequences: 1657284
Number of extensions: 7944480
Number of successful extensions: 15605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15526
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86549281324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)