Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M10
         (942 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    24   2.0  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   8.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   8.0  

>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 591 AALGGVFPXAPPPGTS 638
           A LGG+ P A PP TS
Sbjct: 121 AELGGLGPSASPPNTS 136


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 428 EVRPIRRPPLPARWPDXLCXKKPXTPPP 345
           +++ +  PP P   P  +  +KP  P P
Sbjct: 243 QLKELENPPTPKPRPTKVSRRKPRPPRP 270


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/37 (29%), Positives = 13/37 (35%)
 Frame = -1

Query: 432 PGSAPHTQAASPRALARXXMXEKTXHTSP*TXGXXMN 322
           PG  P T       L R  + E   +T P      MN
Sbjct: 751 PGHGPTTAPMGSSILKRLGIDESVDYTKPLVDAQTMN 787


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 574 PGTVKRPRWG 603
           PG V  PRWG
Sbjct: 47  PGVVTTPRWG 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,755
Number of Sequences: 336
Number of extensions: 1731
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26478848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)