Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M10
         (942 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0490 + 22672241-22674679                                         29   7.1  
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641...    28   9.4  
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450...    28   9.4  
01_06_1214 + 35470688-35471340,35471617-35471701,35471750-354719...    28   9.4  
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134...    28   9.4  

>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +3

Query: 612 PXAPPPGTSIXXIHXQVKGGXXXRDYXXXAXXXPWPXPPP 731
           P  PPP  S    +   KGG   R     A   P P PPP
Sbjct: 608 PPPPPPPPSSIFYNLFKKGGSKSRRIHSVAPPQPPPPPPP 647


>08_01_0722 +
           6412654-6412860,6413142-6413687,6413745-6413877,
           6413917-6414035,6414128-6414883,6415209-6415258,
           6415560-6416679
          Length = 976

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 410 RPPLPARWPDXLCXKKPXTPP 348
           +PP+PA+  + L  KKP +PP
Sbjct: 563 KPPIPAKKLEQLAQKKPPSPP 583


>05_01_0521 +
           4500268-4500283,4500364-4500680,4500999-4501094,
           4501219-4501296,4501333-4501557,4502842-4502910,
           4502946-4503200
          Length = 351

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/27 (59%), Positives = 16/27 (59%)
 Frame = +1

Query: 346 GGGVXGFFXHXXSGQRAGRGGLRMGRT 426
           GGG  GF     SG R GRGG R GRT
Sbjct: 24  GGGGRGFGRVGDSGGRGGRGG-RGGRT 49


>01_06_1214 +
           35470688-35471340,35471617-35471701,35471750-35471906,
           35472086-35472189
          Length = 332

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 606 VFPXAP-PPGTSIXXIHXQVKGGXXXRDYXXXAXXXPWPXPPPPE 737
           + P  P PP T +  IH +  G    R     A   P P PP PE
Sbjct: 7   LLPLKPSPPTTGLNPIHGRRHGHHPSRLLASSAPPPPPPRPPKPE 51


>01_05_0724 -
           24612712-24612852,24612985-24613038,24613340-24613429,
           24613499-24613780,24613926-24614119,24614379-24614508,
           24614610-24614690,24614766-24614891,24615019-24615076,
           24615319-24615380,24615753-24615803,24615946-24616065,
           24616280-24616403,24616832-24616920,24617304-24617396,
           24617910-24618063,24618673-24619178
          Length = 784

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
 Frame = -2

Query: 482 PLPPXXRPSXXSQ*ARNPEVRPIRRPPLPAR-----WPDXLCXKKPXTPPPE 342
           PLPP  R    S  A  P     RR PLP R      P       P  PPPE
Sbjct: 16  PLPPRRRLPLPSSSASFPRAGHHRRLPLPLRALASEGPQPAPSPAPDPPPPE 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,622
Number of Sequences: 37544
Number of extensions: 293046
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)