Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M09
         (946 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.95 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 19/77 (24%), Positives = 23/77 (29%)
 Frame = +1

Query: 598 PGXXXLXXGXXSGFPXLGXXPRXXXXXSPAGXXGSQPXGPXRXPXGPPXPPPGXPXXRPX 777
           P    L     +  P +   P       P+    + P  P   P  PP  PP  P   P 
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL-PPSAPIAPPL 459

Query: 778 XGGDXRXXXRPPPNPXP 828
             G       PP  P P
Sbjct: 460 PAGMPAAPPLPPAAPAP 476



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = +1

Query: 736 PPXPPPGXPXXRPXXGGDXRXXXRPPPNPXP--XXVGTLPSVXAXXFXPXP 882
           PP PP      +P  G        PPP P P     G++P        P P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
 Frame = +1

Query: 679 SPAGXXGSQPXGPXRXPXGPPXPPPGXPXXR----PXXGGDXRXXXRPPPNPXPXXVGTL 846
           +P+      P    R    PP PPP  P       P  G   R    P P P        
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428

Query: 847 PSV 855
           PS+
Sbjct: 429 PSL 431


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 715 PXRXPXGPPXPPPGXPXXRPXXGGDXRXXXRPPPNPXP 828
           P   P  PP P  G P   P   G       PPP P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 727 PXGPPXPPPGXPXXRPXXGGDXRXXXRPPPNPXPXXV 837
           P G P PPP  P   P          +PPP P P  V
Sbjct: 5   PPGNPPPPPPPPGFEP--------PSQPPPPPPPGYV 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,721
Number of Sequences: 5004
Number of extensions: 16514
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)