Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M07
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    46   7e-06
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    28   1.6  
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    27   3.6  
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    26   8.4  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    26   8.4  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 169 SVEDLHKFLDSFDHVLSDCDGVIWT-QDSLPRVGEFFKQMKKRGKTVNFVSN 321
           S ++  +F+D FD  L DCDGV+W+    +P V +  K ++  GK + FVSN
Sbjct: 7   SPKEYKEFIDKFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSN 58



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 5/145 (3%)
 Frame = +2

Query: 287 RNAGRQ*ISFPINSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVT---FNKTV 457
           R+ G+Q I    NS +SR  Y  +     I    E +   + + A Y+K V     +K V
Sbjct: 47  RSLGKQIIFVSNNSTKSRETYMNKINEHGIAAKLEEIYPSAYSSATYVKKVLKLPADKKV 106

Query: 458 YCVTCTETKRVLEAHGFKCKEG--PDLGPEYYGEYIQYLEDDEEIGAVVFDSDFKINLPK 631
           + +     +  L+  G     G  P L      E ++ +  D  +GAV+   D  +   K
Sbjct: 107 FVLGEAGIEDELDRVGVAHIGGTDPSLRRALASEDVEKIGPDPSVGAVLCGMDMHVTYLK 166

Query: 632 MYRAITYLKRPEVLFINGATDRMVP 706
              A  YL+ P   F+    D   P
Sbjct: 167 YCMAFQYLQDPNCAFLLTNQDSTFP 191


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 321 LTAFDPEQIMKLNSKQPASTTALRA*SFHLSQWQSTLNQLHS 446
           LTAF   Q  KLN+K+ +S        F L  W  +  +LH+
Sbjct: 436 LTAFHKLQNEKLNTKKESSAPLSLVTDFLLHSWPKSAERLHT 477


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 106 QKKSLKVLSIMGIESKHLLDLSVEDL 183
           +K+S +  +  G+E + LLDLS E L
Sbjct: 16  KKRSFRTFAYRGVELEQLLDLSAEQL 41


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 106 QKKSLKVLSIMGIESKHLLDLSVEDL 183
           +K++ +  +  G+E + LLDLS E L
Sbjct: 17  KKRTFRTFAYRGVELEQLLDLSAEQL 42


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 239 HITPSQSERTWSKES--RNLCKSSTLKSNKCLDSIPIMLNTLRLFF 108
           ++ P  S   WS  +     C  STL S   L  +P  +N  RLFF
Sbjct: 118 NVDPEISNALWSVLTWKNTSCSFSTLMSILALVYVPSWINLPRLFF 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,734
Number of Sequences: 5004
Number of extensions: 57437
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)