Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M07
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448...    42   9e-04
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039...    40   0.004
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    30   2.2  
07_01_0065 + 466416-467465                                             28   8.8  
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470...    28   8.8  

>09_02_0119 -
           4481522-4481580,4481615-4481718,4483132-4483231,
           4483307-4483404,4483688-4483828,4485736-4485788,
           4486578-4486649,4487730-4487801,4487895-4487987,
           4489040-4489107,4489268-4489358
          Length = 316

 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 166 LSVEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFVSN 321
           L+ +     +DS D  L DCDGVIW  D L   V E    ++K GK + FV+N
Sbjct: 10  LTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTN 62



 Score = 39.5 bits (88), Expect = 0.004
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +2

Query: 287 RNAGRQ*ISFPINSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTFN--KTVY 460
           R  G++ +    NS +SR  Y  +F+A  ++   E +   S A A +LK   F+  K VY
Sbjct: 51  RKMGKKLVFVTNNSRKSRRQYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVY 110

Query: 461 CVTCTETKRVLEAHGFKCKEGP 526
            V        L   GF+C  GP
Sbjct: 111 VVGEDGILEELRLAGFECLGGP 132


>04_04_0337 -
           24503417-24503523,24503612-24503715,24503828-24503927,
           24504009-24504106,24504403-24504455,24504508-24504588,
           24504668-24504739,24504882-24504953,24505045-24505137,
           24505240-24505307,24505388-24505658
          Length = 372

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 172 VEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFVSN 321
           +E+    +DS +  + DCDGVIW  D L   V E    ++ +GK + FV+N
Sbjct: 72  LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTN 122


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
 Frame = +2

Query: 398 IIPSIAVAEYLKSVTFNKTVYCVTCT--ETKRVLEAHGFKCKEGPDLGPEYYGEYIQYLE 571
           ++PS+    Y   + F++T+Y + C+  ++KRV++    K  E   L  E    + +  E
Sbjct: 24  VLPSMK--PYPPELRFDRTIY-IDCSRWKSKRVMQR---KIAEELKLDNETMASFDKQDE 77

Query: 572 DDEEIGAVVFDSDFKINLPKMYRAITYLKRPEVLFINGATDRM 700
           +D+  G  +   D  +N+      I    R  ++F+NG+ D +
Sbjct: 78  EDDFSGVDICSRDAILNVSAAISRILSQSRFLMVFLNGSDDEI 120


>07_01_0065 + 466416-467465
          Length = 349

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 151 KHLLDLSVEDLHKFLDSFDHVLSDCDGVIWTQD 249
           K L  +S ED+ +FLD FD++ +D  G +   D
Sbjct: 302 KELGKISQEDISEFLDEFDNLDADHSGTLSPAD 334


>06_03_1069 -
           27345207-27345488,27345746-27346078,27346252-27347041,
           27347153-27347351,27347522-27347667,27347823-27348094,
           27348161-27348262,27348351-27348470,27348576-27348729,
           27348986-27349114,27349554-27349900
          Length = 957

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 536 PEYYGEYIQYLEDDEEIGAVVFDSDFKINLPK-MYRAITYLKRPEVLFINGATDRMVP 706
           P +Y E + YLE + +     F  ++K  +PK +   ++ L    V  +N AT   VP
Sbjct: 359 PNFYDETLLYLEQEWKWCLTAFPEEYKSLVPKVLVETMSELNSSFVSRVNLATGDAVP 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,286,761
Number of Sequences: 37544
Number of extensions: 353124
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)