Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_M07
(902 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61950-4|AAC24287.2| 303|Caenorhabditis elegans Hypothetical pr... 45 6e-05
L14710-4|AAK84537.3| 526|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U97002-10|AAB52266.1| 322|Caenorhabditis elegans Hypothetical p... 33 0.21
AF039035-3|AAB94163.1| 349|Caenorhabditis elegans Hypothetical ... 33 0.21
AF016421-1|AAC25793.1| 335|Caenorhabditis elegans Hypothetical ... 33 0.28
U64847-6|AAB04875.1| 380|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule abn... 29 6.0
AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule abn... 29 6.0
AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein. 29 6.0
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla... 28 7.9
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr... 28 7.9
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ... 28 7.9
>U61950-4|AAC24287.2| 303|Caenorhabditis elegans Hypothetical
protein C45E5.1 protein.
Length = 303
Score = 45.2 bits (102), Expect = 6e-05
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Frame = +2
Query: 323 NSLRSRANYEAQFKAASIDN-GFESLIIPSIAVAEYLK--SVTF-NKTVYCVTCTETKRV 490
NS ++ Y + K G E+L+ P+I + +Y K S F N+ +Y + K+
Sbjct: 57 NSTKTLEQYMKKVKKMRFGRLGRENLLSPTIVLCDYFKQNSDKFENQYIYLIGVENLKKS 116
Query: 491 LE-AHGFKC-KEGPDLGPEYY-GEYIQYLEDDEEIG-AVVFDSDFKINLPKMYRAITYLK 658
LE G KC GPD Y G++I ++ +I AVV D + PK+ +A +L
Sbjct: 117 LEEGGGVKCFGTGPDHKDNYTDGDFINEVDVKSKIPKAVVVSFDSHFSYPKLMKAANFLA 176
Query: 659 RPEVLFINGATDRMVP 706
P V F+ D P
Sbjct: 177 DPLVEFLVCNEDSTFP 192
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 187 KFLDSFDHVLSDCDGVIWTQD-SLPRVGEFFKQM 285
+ L +FD + D DGV+WT D +P E+ +
Sbjct: 10 QLLSNFDTFVFDADGVLWTGDIPIPGAAEWINTL 43
>L14710-4|AAK84537.3| 526|Caenorhabditis elegans Hypothetical
protein K02D10.1a protein.
Length = 526
Score = 42.7 bits (96), Expect = 3e-04
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Frame = +2
Query: 323 NSLRSRANYEAQFKAASIDN-GFESLIIPSIAVAEYLKSVT---FNKTVYCVTCTETKRV 490
NS ++ Y + + + G ++I P+I +A+YLKS + VY + K
Sbjct: 57 NSTKTLEQYMKKIEKLGFGHLGRNNVISPAIVLADYLKSNADKFSGEYVYLIGTENLKAT 116
Query: 491 LEAHG-FKC-KEGPDLGPEYY-GEYIQYLEDDEEIGAVVFDSDFKINLPKMYRAITYLKR 661
LE G KC GPD ++ G++I ++ AVV D + PK+ +A YL+
Sbjct: 117 LENDGGVKCFGTGPDSIRDHTDGDFIHKVDMSIAPKAVVCSYDAHFSYPKIMKASNYLQD 176
Query: 662 PEVLFINGATDRMVP 706
P V ++ D P
Sbjct: 177 PSVEYLVTNQDYTFP 191
>U97002-10|AAB52266.1| 322|Caenorhabditis elegans Hypothetical
protein K09H11.7 protein.
Length = 322
Score = 33.5 bits (73), Expect = 0.21
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Frame = +2
Query: 299 RQ*ISFPINSLRSRANYEAQFKAASIDNGF---ESLIIPSIAVAEYLKSVTFN-KTVYCV 466
+Q I N+ +SRA Y + ++ +L+ P+ VA+ L + K VY +
Sbjct: 62 KQIIVLTNNATKSRAVYAKKLAKLGYNSSKMNKNNLVNPAAVVADTLHRAGLDGKRVYLI 121
Query: 467 TCTETKRVLEAHGFKC-KEGPDLGPEYY---GEYIQYLEDDEEIGAVVFDSDFKINLPKM 634
+ ++ G + GP+ + G ++ ++ +E +GAVV + + KM
Sbjct: 122 GEQGLRDEMDELGIEYFGHGPEKKQDEADGSGAFMYDIKLEENVGAVVVGYEKHFDYVKM 181
Query: 635 YRAITYLKRPEVLFINGATDRMVP 706
+A YL+ VLF+ D P
Sbjct: 182 MKASNYLREEGVLFVATNEDETCP 205
>AF039035-3|AAB94163.1| 349|Caenorhabditis elegans Hypothetical
protein C53A3.2 protein.
Length = 349
Score = 33.5 bits (73), Expect = 0.21
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Frame = +2
Query: 299 RQ*ISFPINSLRSRANYEAQFKAASIDNGF---ESLIIPSIAVAEYLKSVTFN-KTVYCV 466
+Q I N+ +SRA Y + ++ +L+ P+ VA+ L + K VY +
Sbjct: 89 KQIIVLTNNATKSRAVYAKKLAKLGYNSSKMNKNNLVNPAAVVADTLHRAGLDGKRVYLI 148
Query: 467 TCTETKRVLEAHGFKC-KEGPDLGPEYY---GEYIQYLEDDEEIGAVVFDSDFKINLPKM 634
+ ++ G + GP+ + G ++ ++ +E +GAVV + + KM
Sbjct: 149 GEQGLRDEMDELGIEYFGHGPEKKQDEADGSGAFMYDIKLEENVGAVVVGYEKHFDYVKM 208
Query: 635 YRAITYLKRPEVLFINGATDRMVP 706
+A YL+ VLF+ D P
Sbjct: 209 MKASNYLREEGVLFVATNEDETCP 232
>AF016421-1|AAC25793.1| 335|Caenorhabditis elegans Hypothetical
protein F44E7.2 protein.
Length = 335
Score = 33.1 bits (72), Expect = 0.28
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Frame = +2
Query: 299 RQ*ISFPINSLRSRANYEAQFKAASIDNGF---ESLIIPSIAVAEYLKSVTFN-KTVYCV 466
+Q I N+ +SRA Y + ++ +L+ P+ VA+ L + K VY +
Sbjct: 79 KQIIVLTNNATKSRAVYAKKLAKLGYNSSKMNKNNLVNPAAVVADTLHRAGLDGKRVYLI 138
Query: 467 TCTETKRVLEAHGFKC-KEGPDLGPEYY---GEYIQYLEDDEEIGAVVFDSDFKINLPKM 634
+ ++ G + GP+ + G ++ ++ +E +GAVV + + KM
Sbjct: 139 GEQGLRDEMDELGIEYFGHGPEKKQDEADGSGAFMYDIKLEENVGAVVVGYEKHFDYIKM 198
Query: 635 YRAITYLKRPEVLFINGATDRMVP 706
+A YL+ VLF+ D P
Sbjct: 199 MKASNYLREEGVLFVATNEDETCP 222
>U64847-6|AAB04875.1| 380|Caenorhabditis elegans Hypothetical
protein F08F3.8 protein.
Length = 380
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 371 SIDNGFESLIIPSIAVAEYLK 433
+IDNGFE +++P + A Y K
Sbjct: 50 AIDNGFEQILVPKVCAANYDK 70
>AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule
abnormality protein 3,isoform b protein.
Length = 628
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 106 QKKSLKVLSIMGIESKHLLDLSVEDLHKFLDSFDHV 213
+KKSL L + +SK+LL S + + LDS DHV
Sbjct: 338 EKKSLNQLQFLSPKSKNLLVDSFKKFAQGLDSKDHV 373
>AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule
abnormality protein 3,isoform a protein.
Length = 693
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 106 QKKSLKVLSIMGIESKHLLDLSVEDLHKFLDSFDHV 213
+KKSL L + +SK+LL S + + LDS DHV
Sbjct: 403 EKKSLNQLQFLSPKSKNLLVDSFKKFAQGLDSKDHV 438
>AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein.
Length = 693
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 106 QKKSLKVLSIMGIESKHLLDLSVEDLHKFLDSFDHV 213
+KKSL L + +SK+LL S + + LDS DHV
Sbjct: 403 EKKSLNQLQFLSPKSKNLLVDSFKKFAQGLDSKDHV 438
>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
protein 8 protein.
Length = 1206
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 437 VTFNKTVYCVTCTETKRVLEAHGFKCKE 520
+TFN +Y C ET+R+L +G + E
Sbjct: 10 LTFNVLIYLAACQETERILANNGTEDNE 37
>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
protein T05A7.11 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 524 PDLGPEYYGEYIQYLEDDEEIGAVVFDSDFKI 619
P LGP+Y G ++E ++ +++D+D ++
Sbjct: 485 PSLGPKYNGCVFAWIEQEQSYWQMMYDNDIRM 516
>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1152
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 437 VTFNKTVYCVTCTETKRVLEAHGFKCKE 520
+TFN +Y C ET+R+L +G + E
Sbjct: 10 LTFNVLIYLAACQETERILANNGTEDNE 37
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,614
Number of Sequences: 27780
Number of extensions: 314938
Number of successful extensions: 757
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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