Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M05
         (922 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000519ABE Cluster: PREDICTED: similar to CG12252-PA...    59   2e-07
UniRef50_Q8MQY2 Cluster: SD01014p; n=4; Diptera|Rep: SD01014p - ...    59   2e-07
UniRef50_UPI0000D56AA7 Cluster: PREDICTED: similar to CG12252-PA...    57   6e-07
UniRef50_Q16EJ3 Cluster: RNA polymerase ii ctd phosphatase; n=1;...    56   1e-06
UniRef50_Q9Y5B0 Cluster: RNA polymerase II subunit A C-terminal ...    47   6e-04
UniRef50_Q98SN2 Cluster: CTD phosphatase; n=10; Tetrapoda|Rep: C...    44   0.004
UniRef50_Q95QG8 Cluster: Putative uncharacterized protein fcp-1;...    44   0.004
UniRef50_UPI0000E817BB Cluster: PREDICTED: similar to Ac2-059; n...    42   0.022
UniRef50_A7S819 Cluster: Predicted protein; n=1; Nematostella ve...    42   0.029
UniRef50_UPI0000D9D6B2 Cluster: PREDICTED: hypothetical protein;...    36   1.1  

>UniRef50_UPI0000519ABE Cluster: PREDICTED: similar to CG12252-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to
           CG12252-PA - Apis mellifera
          Length = 711

 Score = 58.8 bits (136), Expect = 2e-07
 Identities = 29/52 (55%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
 Frame = -3

Query: 488 VADLEECRHPTVMMEMCAECGADLRSE------ETKKLDVAIVPMVHSVPFL 351
           +  LE C+HPTVM ++CAECG DLR E      E  K+  A VPMVHSVP L
Sbjct: 79  IMTLEGCKHPTVMKDLCAECGVDLRVEGIGKENENTKISQASVPMVHSVPEL 130


>UniRef50_Q8MQY2 Cluster: SD01014p; n=4; Diptera|Rep: SD01014p -
           Drosophila melanogaster (Fruit fly)
          Length = 896

 Score = 58.8 bits (136), Expect = 2e-07
 Identities = 25/47 (53%), Positives = 33/47 (70%)
 Frame = -3

Query: 491 AVADLEECRHPTVMMEMCAECGADLRSEETKKLDVAIVPMVHSVPFL 351
           A+ +L EC H TV+ +MCA+CGADLR  E  +   A VPMVH++P L
Sbjct: 154 AILELSECIHTTVIKDMCADCGADLRQNENGQTSEASVPMVHTMPDL 200


>UniRef50_UPI0000D56AA7 Cluster: PREDICTED: similar to CG12252-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG12252-PA - Tribolium castaneum
          Length = 760

 Score = 57.2 bits (132), Expect = 6e-07
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = -3

Query: 488 VADLEECRHPTVMMEMCAECGADLRSEETKKLDVAIVPMVHSVPFL 351
           + +L+EC HPTVM +MCAECG DLR  +      A VPMVH++P L
Sbjct: 76  LCELKECTHPTVMNDMCAECGTDLRKNDVSV--AASVPMVHAIPDL 119


>UniRef50_Q16EJ3 Cluster: RNA polymerase ii ctd phosphatase; n=1;
           Aedes aegypti|Rep: RNA polymerase ii ctd phosphatase -
           Aedes aegypti (Yellowfever mosquito)
          Length = 569

 Score = 56.0 bits (129), Expect = 1e-06
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = -3

Query: 479 LEECRHPTVMMEMCAECGADLRSEETKKLDVAIVPMVHSVPFL 351
           LE+C H TV+ +MCA+CGADLR ++      A VPM+HSVP L
Sbjct: 80  LEQCSHTTVINDMCADCGADLRQDDLAGGSEASVPMIHSVPEL 122


>UniRef50_Q9Y5B0 Cluster: RNA polymerase II subunit A C-terminal
           domain phosphatase; n=34; Eumetazoa|Rep: RNA polymerase
           II subunit A C-terminal domain phosphatase - Homo
           sapiens (Human)
          Length = 961

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
 Frame = -3

Query: 479 LEECRHPTVMMEMCAECGADLRSEETKK------LDVAIVPMVHSVPFLI 348
           LE C HP VM  +CAECG DL   ++K       L  A V MVHSVP L+
Sbjct: 111 LEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELM 160


>UniRef50_Q98SN2 Cluster: CTD phosphatase; n=10; Tetrapoda|Rep: CTD
           phosphatase - Xenopus laevis (African clawed frog)
          Length = 980

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -3

Query: 479 LEECRHPTVMMEMCAECGADLRSEETKK------LDVAIVPMVHSVPFLI 348
           L  C HP VM  +CAECG DL   ++K          A V MVHSVP L+
Sbjct: 104 LSSCNHPVVMKGLCAECGQDLTQLQSKNGKQQVPYSTATVSMVHSVPELM 153


>UniRef50_Q95QG8 Cluster: Putative uncharacterized protein fcp-1;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein fcp-1 - Caenorhabditis elegans
          Length = 659

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = -3

Query: 488 VADLEECRHPTVMMEMCAECGADLRSE-----ETKKLDVAIVPMVHSVPFLI 348
           +A + EC H  V+ +MCA CG DLR +     + K+   A V M+H VP LI
Sbjct: 70  IATVSECTHAIVIKDMCATCGKDLREKGGRAGQRKEQSTANVSMIHHVPELI 121


>UniRef50_UPI0000E817BB Cluster: PREDICTED: similar to Ac2-059; n=1;
           Gallus gallus|Rep: PREDICTED: similar to Ac2-059 -
           Gallus gallus
          Length = 1412

 Score = 41.9 bits (94), Expect = 0.022
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 359 VQSVPLVQWPRPASWSPRCG-GLLHTPRTSPSSLLDGGILP 478
           V  +P+  WPRP  W P CG GL     TSPS+ L   +LP
Sbjct: 730 VTGLPVSAWPRPPRWDPECGWGLPDLGCTSPSTSLQSPVLP 770


>UniRef50_A7S819 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 135

 Score = 41.5 bits (93), Expect = 0.029
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
 Frame = -3

Query: 470 CRHPTVMMEMCAECGADLR-----SEETKKLDVAIVPMVHSVP 357
           C H T+M ++C +CGADLR     ++E    + A + M+H++P
Sbjct: 91  CEHKTIMKDLCCDCGADLRKLHGDNDEPSSPNSATISMIHNIP 133


>UniRef50_UPI0000D9D6B2 Cluster: PREDICTED: hypothetical protein;
           n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
           - Macaca mulatta
          Length = 300

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +2

Query: 371 PLVQWPRPASWSPRCGGLLHTPR 439
           PLVQ PRPA  +PRC G  H PR
Sbjct: 147 PLVQDPRPARQAPRCSGSCHLPR 169


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 815,622,554
Number of Sequences: 1657284
Number of extensions: 15856775
Number of successful extensions: 35495
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35484
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84441173866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)