Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M05
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    28   1.6  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   8.6  

>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 571 KFYICHNIFIRRCYRLFQT*YFAFT 497
           +FY  H +F+  C+  F T Y +FT
Sbjct: 465 RFYYGHYVFVNTCHNFFLTLYQSFT 489


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 451 ITVGWRHSSKSATAEL*TQNTTFETIDNIV 540
           I  GW+  S++   +   +  TFET++N++
Sbjct: 120 IADGWKSPSETVEQDFRVREITFETLENVI 149


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 378 TNGTLCTLSDLHELSDYIININTHYPVEDSRFID*QLLGTGY*LIASW 235
           TNG+L  + D+H  +DY   + T Y     R      LG  Y +  SW
Sbjct: 706 TNGSLDEVEDMHSHADYFKEMITGYAKRSLR-----TLGLCYRVFDSW 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,981
Number of Sequences: 5004
Number of extensions: 68976
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)