Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M05
         (922 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063447-1|AAH63447.1|  867|Homo sapiens CTD (carboxy-terminal d...    47   8e-05
BC052576-1|AAH52576.1|  874|Homo sapiens CTDP1 protein protein.        47   8e-05
AF154115-1|AAD42088.1|  961|Homo sapiens RNA polymerase II CTD p...    47   8e-05

>BC063447-1|AAH63447.1|  867|Homo sapiens CTD (carboxy-terminal
           domain, RNA polymerase II, polypeptide A) phosphatase,
           su protein.
          Length = 867

 Score = 47.2 bits (107), Expect = 8e-05
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
 Frame = -3

Query: 479 LEECRHPTVMMEMCAECGADLRSEETKK------LDVAIVPMVHSVPFLI 348
           LE C HP VM  +CAECG DL   ++K       L  A V MVHSVP L+
Sbjct: 111 LEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELM 160


>BC052576-1|AAH52576.1|  874|Homo sapiens CTDP1 protein protein.
          Length = 874

 Score = 47.2 bits (107), Expect = 8e-05
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
 Frame = -3

Query: 479 LEECRHPTVMMEMCAECGADLRSEETKK------LDVAIVPMVHSVPFLI 348
           LE C HP VM  +CAECG DL   ++K       L  A V MVHSVP L+
Sbjct: 24  LEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELM 73


>AF154115-1|AAD42088.1|  961|Homo sapiens RNA polymerase II CTD
           phosphatase protein.
          Length = 961

 Score = 47.2 bits (107), Expect = 8e-05
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
 Frame = -3

Query: 479 LEECRHPTVMMEMCAECGADLRSEETKK------LDVAIVPMVHSVPFLI 348
           LE C HP VM  +CAECG DL   ++K       L  A V MVHSVP L+
Sbjct: 111 LEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELM 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,857,973
Number of Sequences: 237096
Number of extensions: 2389828
Number of successful extensions: 4499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4496
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)