Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M04
         (1132 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.018
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.52 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   6.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.018
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 980  PPPPPPGVGXXXPPPP 1027
            PPPPPPGV    PPPP
Sbjct: 763  PPPPPPGVAGAGPPPP 778



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 980  PPPPPPGVGXXXPPPP 1027
            PPPPP   G   PPPP
Sbjct: 764  PPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 983  PPPPPGVGXXXPPPP 1027
            PPP P +G   PPPP
Sbjct: 752  PPPAPIMGGPPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 962  PKNXXXPPPPPPGVGXXXPPPP 1027
            P     PPPPPPG      PPP
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPP 26



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 962  PKNXXXPPPPPPGVGXXXPPPP 1027
            P N   PPPPP       PPPP
Sbjct: 6    PGNPPPPPPPPGFEPPSQPPPP 27


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 983  PPPPPGVGXXXPPP 1024
            PPPP G G   PPP
Sbjct: 129  PPPPAGFGRGAPPP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,678
Number of Sequences: 5004
Number of extensions: 19204
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 601638964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)