Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_M03
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831 45 7e-05
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 41 0.001
06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781 35 0.077
06_03_0907 - 25851673-25852368,25853531-25853585,25853973-258540... 34 0.18
03_02_0040 + 5221015-5221322,5221423-5222254 34 0.18
02_01_0595 + 4420112-4420401,4420518-4420607,4421883-4421931,442... 33 0.24
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 31 1.3
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 29 5.1
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 29 5.1
02_01_0685 - 5079179-5079601 29 5.1
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976... 29 6.7
12_02_0189 + 15165485-15168694 28 8.8
>12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831
Length = 418
Score = 45.2 bits (102), Expect = 7e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 639 FRHLPRWLQDNDYLHKGHRPXLPSFSACFASIFRIHTETGNIWT 770
+ LP WL+DN+++H +R P SIF IH ET N+WT
Sbjct: 47 YEELPEWLKDNEFIHGYYRCEWP-MKETILSIFSIHNETLNVWT 89
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +3
Query: 564 WAHNAAEQAEEFVRKVWEASWNVCHFRHLPRWLQDNDYLHKGHRPXLPSFSACFASIFRI 743
WA A ++ +E +R+ + + +R LP +++DN+Y+ + +R P S F I
Sbjct: 14 WAE-AEDERKEGLRR--RRRYGLVEYRALPGYMRDNEYILRHYRCEWP-LPQVLLSAFSI 69
Query: 744 HTETGNIWT 770
H ET N+WT
Sbjct: 70 HNETLNVWT 78
>06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781
Length = 389
Score = 35.1 bits (77), Expect = 0.077
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 639 FRHLPRWLQDNDYLHKGHRPXLPSFSACFASIFRIHTETGNIWT 770
F LP +L+DN+++ +GH S S F H ET N+WT
Sbjct: 70 FEELPDYLKDNEFI-RGHYRCEWSVRDALRSAFAWHNETLNVWT 112
>06_03_0907 -
25851673-25852368,25853531-25853585,25853973-25854068,
25854170-25854435
Length = 370
Score = 33.9 bits (74), Expect = 0.18
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 639 FRHLPRWLQDNDYLHKGHRPXLPSFSACFASIFRIHTETGNIWT 770
+ LP ++++N+++ +R P +A S+F H ET NIWT
Sbjct: 47 YHELPDYMKENEFILDYYRSEWPILNALL-SLFSWHNETINIWT 89
>03_02_0040 + 5221015-5221322,5221423-5222254
Length = 379
Score = 33.9 bits (74), Expect = 0.18
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 603 RKVWEASWNVCHFRHLPRWLQDNDYLHKGHRPXLPSFSACFASIFRIHTETGNIWT 770
++ E + + + LP +L+ N+++ +R P A S F +H ET N+WT
Sbjct: 49 KRCCERKYELVSYDALPAFLKHNEFIIDYYRSEWPIKQALL-SAFAVHNETVNVWT 103
>02_01_0595 +
4420112-4420401,4420518-4420607,4421883-4421931,
4423337-4424020
Length = 370
Score = 33.5 bits (73), Expect = 0.24
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 576 AAEQAEEFVRKVWEASWNVCHFRHLPRWLQDNDYLHKGHRPXLPSFSACFASIFRIHTET 755
AAE A E R++ + + LP +L+DN+++ +R P A S F H ET
Sbjct: 39 AAEAAAERGRRL-----RLVGYDELPDFLRDNEFIRGYYRAEWPLRDAAL-SAFSWHNET 92
Query: 756 GNIWT 770
N+WT
Sbjct: 93 LNVWT 97
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 324 SHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL 211
+H+ C + GNW+ + + F+ G + V K K+Q+
Sbjct: 139 AHLQLCIESSSNGNWRSIWTLEFIDGLQLVEIKGKIQV 176
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 29.1 bits (62), Expect = 5.1
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 235 NCSCTANKGHGGQWLPISHLRVIE 306
+C C +KG + +P+ HLR+++
Sbjct: 557 DCKCEQHKGWSNEMIPLDHLRMVD 580
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 357 DTLWDPISDSTSHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL-RHKKFTPN 187
DT++DP++ S HI+ C+ + A+VT V G ++ RKSK L R PN
Sbjct: 204 DTVFDPVALSCGHIY-CYLCSCSA-----ASVTIVDGLKSAERKSKCPLCRQAGVFPN 255
>02_01_0685 - 5079179-5079601
Length = 140
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = -2
Query: 744 GFGKLMQNMR*TKVEXVYVLCVNNRCLAANVANV*NGTRSTTPPILCERILRPVRRRYGP 565
GFG +M + V +LC + V G P ++ R+L P+ R P
Sbjct: 39 GFGVVMALIA---VALAVLLCTRRKDGGRGVGGEERGDVVVPPGMMSVRVLAPLDREAPP 95
Query: 564 SAPKSISSDNTPAFKTSA 511
++ D++P+F SA
Sbjct: 96 RVVVVMAGDDSPSFLASA 113
>12_01_0969 -
9765114-9765664,9767963-9768512,9769507-9769561,
9769918-9769980,9770547-9771325
Length = 665
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 636 GTRSTTPPILCERILRPVRRRYGPSAPKSISSDNTP 529
GT S PP L +L +R R+G SA +S + P
Sbjct: 119 GTPSLVPPRLVAAVLDALRTRFGLSASPEVSIEMDP 154
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 350 SVSSDGLRRRQGWDPD 397
+V S GLRRR WDPD
Sbjct: 767 TVDSVGLRRRTAWDPD 782
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,575,261
Number of Sequences: 37544
Number of extensions: 528439
Number of successful extensions: 1368
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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