Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M03
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.8  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 KLVVCRSDFYRTKTTQSEVIGCK 198
           +L V  SD+   +  Q+E IGCK
Sbjct: 600 ELFVMVSDYKDDRVEQNEPIGCK 622


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 777  PWLRGIHWRRDLLFVSSIY 833
            PWL G+H   +L++   I+
Sbjct: 998  PWLEGVHVTPELIYEYQIH 1016


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +1

Query: 784 CVAFIGVAIYFLSRPSI 834
           C++ + + +Y++S P I
Sbjct: 178 CISILAIKVYYISCPEI 194


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 338 IGSQSVSSDGLRRR 379
           +G Q+ + DGLRRR
Sbjct: 425 VGEQARAQDGLRRR 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,933
Number of Sequences: 438
Number of extensions: 5333
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)