Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M01
         (936 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...   121   3e-26
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   109   8e-23
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    93   1e-17
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   4e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   3e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    58   3e-07
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.052
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    40   0.069
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.091
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   6.0  
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   6.0  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   6.0  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score =  121 bits (291), Expect = 3e-26
 Identities = 71/121 (58%), Positives = 77/121 (63%)
 Frame = +3

Query: 318 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 497
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76

Query: 498 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLEAPSCALLFRPCRLR 677
               RPR  RFSIGSAPLTSI K DAQ+ GGETRQDYKD  RFPL APSCALLF P  L 
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133

Query: 678 I 680
           +
Sbjct: 134 V 134


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score =  109 bits (263), Expect = 8e-23
 Identities = 53/63 (84%), Positives = 54/63 (85%)
 Frame = +3

Query: 486 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLEAPSCALLFRP 665
           SK+  T    R  RFSIGSAPLTSITKIDAQVRGGETRQDYKDT RFPLEAPSCALLFRP
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61

Query: 666 CRL 674
           CRL
Sbjct: 62  CRL 64


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 92.7 bits (220), Expect = 1e-17
 Identities = 44/54 (81%), Positives = 46/54 (85%)
 Frame = +3

Query: 504 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLEAPSCALLFRP 665
           V+ PR  RFSIGSAPLTSITK DAQ+ GGETRQDYKDT RFPL APSCALLF P
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.5 bits (150), Expect = 4e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -2

Query: 494 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 381
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 294 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 461
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
 Frame = +3

Query: 393 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 566
           C  R Q    R  G  +P+N  I  +R   + + + P T        F   S PLT+ITK
Sbjct: 22  CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81

Query: 567 IDAQVRGGETRQDYKDTXRFPLEAPSCALLFRP 665
           I  Q +  +T+ +YK T  FPL++PS +LLF P
Sbjct: 82  IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 97  DPDMIRYIDEFGQTTTRMQ 153
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +2

Query: 413 HSKAVIRLSTESGDNAGKNM 472
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.052
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 292 SALMNRPTRGERRFAYW 342
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 40.3 bits (90), Expect = 0.069
 Identities = 20/32 (62%), Positives = 21/32 (65%)
 Frame = -3

Query: 673 KRQGRNRRAHEGASRGKRXVSL*SCRVSPPLT 578
           KRQGRNRRAHEGA+  K   SL      PPLT
Sbjct: 68  KRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.091
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -3

Query: 364 ERGSGRAPNTQTASPRALADSLMQ 293
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 6.0
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 503 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 381
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 6.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 175 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 342
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 6.0
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 255 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 91
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,528,970
Number of Sequences: 1657284
Number of extensions: 12057950
Number of successful extensions: 33364
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33357
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)