Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L22
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical
           protein W09C5.5 protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 564 NRRSSXXWRXPTGL*XXPGVSPGSSLVRSPVPTLPLTGIPV 686
           ++R S   R   G    PG  P    +  P+PT P TG PV
Sbjct: 137 HKRCSNAARNNCGAPGAPGAQPSRPPILPPIPTTP-TGFPV 176


>Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical
           protein T05E11.8 protein.
          Length = 202

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 716 RHGXPKGRKADRYSGKRQGRNRRA-HEGASRG 624
           RHG  KG K  ++ GK+ G  +R  H G   G
Sbjct: 163 RHGGRKGGKGGKHFGKKNGDKKRGPHGGDEEG 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,623
Number of Sequences: 27780
Number of extensions: 284106
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)