Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L18
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   134   2e-32
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    27   3.0  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    26   9.1  
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    26   9.1  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  134 bits (323), Expect = 2e-32
 Identities = 65/123 (52%), Positives = 81/123 (65%)
 Frame = +3

Query: 327 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAI 506
           K++A YIWIDG   HLR K  TL+  P +   L +WNFDGSST QA G+NSDT L P A+
Sbjct: 27  KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSSTGQAPGNNSDTLLKPVAM 85

Query: 507 YKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDL 686
           Y DPFRRG++ILV+   Y  +  P   N+R +C +  +K  D E WFGIEQEY +LD   
Sbjct: 86  YNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHADKETWFGIEQEYTMLDYYD 145

Query: 687 RPF 695
           RPF
Sbjct: 146 RPF 148


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 375 SGVRQSRRSKCRWRESCQPASGRSLYRLSSVLDSTAFGELVKTGPDRIFGLSSI 214
           +G+R +R  K R + + +P SG +      ++ +   G+L  T P   +G S+I
Sbjct: 128 AGLRWARTEKFRKKNNAEPGSGTACRIYGQLVVNRVNGQLHITAPGWGYGRSNI 181


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 447 SSTNQADGHNSDTYLVPRAI 506
           + T   +G NSDTY++PR +
Sbjct: 219 TETRILNGKNSDTYIIPRPL 238


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -1

Query: 668 NIFLFYPKPGLIILAFVVS-------FLTTDAIVALCWLHVVFIRITHNEDVISSTEWIL 510
           N  L + KPGL+ +A           F+TT     L   HVVF  +T   DV+   E + 
Sbjct: 85  NFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLG 144

Query: 509 VNS 501
            NS
Sbjct: 145 SNS 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,846
Number of Sequences: 5004
Number of extensions: 69239
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)