Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_L18
(962 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 135 4e-32
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 135 6e-32
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 127 2e-29
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 111 1e-24
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 32 0.78
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551... 29 5.5
01_01_0307 + 2513678-2513772,2514064-2514682 29 5.5
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 29 7.3
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 28 9.6
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 135 bits (327), Expect = 4e-32
Identities = 64/123 (52%), Positives = 81/123 (65%), Gaps = 2/123 (1%)
Frame = +3
Query: 324 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRA 503
DKI+A YIW+ G+G LR K RT++ + P +LP WN+DGSST QA G +S+ L P+A
Sbjct: 816 DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQA 875
Query: 504 IYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLD 677
I+KDPFR GN+ILVMCDTY EP +N R + + K PWFGIEQEY LL
Sbjct: 876 IFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQ 935
Query: 678 SDL 686
D+
Sbjct: 936 RDV 938
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 135 bits (326), Expect = 6e-32
Identities = 64/123 (52%), Positives = 82/123 (66%), Gaps = 2/123 (1%)
Frame = +3
Query: 324 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRA 503
+KI+A YIWI GSG LR K RTL+ P LP WN+DGSST QA G +S+ L P+A
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 504 IYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLD 677
I+KDPFR+GN+ILVMCD Y EP +N R + + + + +EPW+GIEQEY LL
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQ 136
Query: 678 SDL 686
D+
Sbjct: 137 KDI 139
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 127 bits (306), Expect = 2e-29
Identities = 62/124 (50%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
Frame = +3
Query: 321 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPR 500
+DKI+A YIW+ GSG LR K RT+ LP WN+DGSST QA G +S+ L P+
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75
Query: 501 AIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILL 674
AI+KDPFRRG++ILVMCD Y EP +N R S + ++ + PW+GIEQEY LL
Sbjct: 76 AIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLL 135
Query: 675 DSDL 686
D+
Sbjct: 136 QKDV 139
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 111 bits (266), Expect = 1e-24
Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
Frame = +3
Query: 369 HLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVM 548
HL+ + TL+ P LP WNFDGSST QA G +S+ L P+AI++DPFR+G +ILVM
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 549 CDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILLDSDL 686
CD Y N EP +NNR + ++ K +EPW+GIEQEY LL +
Sbjct: 119 CDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHI 166
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 31.9 bits (69), Expect = 0.78
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 242 GPVLTNSPNAVLSKTLLSRYNDLPLAG*QDSRHL--HLDRRLWRTPEVQRSHLEFHT*SS 415
GP N+PN V ++ L S Y P G H+ H+D W PEV R E +
Sbjct: 317 GPSGPNTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILA 376
Query: 416 QRSAYMELR 442
Q+ LR
Sbjct: 377 QKMTIAALR 385
>12_02_1088 -
25954506-25954652,25954769-25954918,25955011-25955116,
25955247-25955569,25955656-25955790,25956310-25956444,
25956445-25956525,25956619-25956807,25956935-25957127,
25957244-25957350,25957457-25957531,25957619-25957774,
25957968-25958051,25958152-25958265,25958345-25958440,
25958543-25958633,25958721-25958836,25958934-25959093,
25960390-25960634
Length = 900
Score = 29.1 bits (62), Expect = 5.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 242 GPVLTNSPNAVLSKTLLSRYNDLPLAG*QDSRHL--HLDRRLWRTPEVQRSHLEFHT*SS 415
GP N+PN + ++ L S Y P G ++ H+D W PEV R E +
Sbjct: 314 GPSGPNTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILA 373
Query: 416 QRSAYMELR 442
Q+ LR
Sbjct: 374 QKMTIAALR 382
>01_01_0307 + 2513678-2513772,2514064-2514682
Length = 237
Score = 29.1 bits (62), Expect = 5.5
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 217 YFGMRCISHFETGKAR--LCLEMFPRCEC*ILRENV 116
Y CISHF KAR LC E +P C I+ + V
Sbjct: 195 YRTQNCISHFLANKARAKLCTEFWPDETCNIISQFV 230
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 28.7 bits (61), Expect = 7.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 321 PASGRSLYRLSSVLDSTAFGELVKTGPDR 235
P+ +LY SS+LD + GEL++ PDR
Sbjct: 558 PSQTSTLYCQSSLLDKSENGELIEMYPDR 586
>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 28.3 bits (60), Expect = 9.6
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 366 RQSRRSKCRWRESCQPASGRSLYRLSSVLDSTAFGELVK 250
R SRR RWR S YR + S FG +VK
Sbjct: 1265 RSSRRRSGRWRRRVGGTSSTRCYRQIGRISSGGFGVVVK 1303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,033,754
Number of Sequences: 37544
Number of extensions: 466659
Number of successful extensions: 1188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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