Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L14
         (963 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.66 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.66 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   4.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   4.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   8.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 319 PPPPXPHXGPP 351
           PPPP PH  PP
Sbjct: 736 PPPPHPHHQPP 746



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 527 PPPPPPXXXPPPPP 568
           PPPP P   PP  P
Sbjct: 736 PPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 319 PPPPXPHXGPP 351
           PPPP PH  PP
Sbjct: 628 PPPPHPHHQPP 638



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 527 PPPPPPXXXPPPPP 568
           PPPP P   PP  P
Sbjct: 628 PPPPHPHHQPPRNP 641


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/32 (37%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
 Frame = +1

Query: 727 PXXXPPPPPXXXKHPP--PPXXGGGXPPPPPP 816
           P   PPPPP    H     P    G PP   P
Sbjct: 159 PLHYPPPPPVYTHHYARYHPYPNFGVPPAGIP 190


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 524 APPPPPP 544
           APPPPPP
Sbjct: 730 APPPPPP 736


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 318 PPPPXPXXGXPXPSXXP 368
           PPPP      P PS  P
Sbjct: 330 PPPPYQISAQPTPSQSP 346


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +1

Query: 307 GGXXPPPPXPHXGPPXLXFXPPPPPXGTXXPPPXG 411
           GG     P P+  P  +   PP  P      PP G
Sbjct: 402 GGQMFEAPIPNVSPHYVTPTPPEAPLFQNVLPPIG 436


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.311    0.160    0.616 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,328
Number of Sequences: 336
Number of extensions: 8331
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27202879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)