Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L14
         (963 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.25 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +1

Query: 310 GXXPPPPXPHXGPPXLXFXPPPPPXGTXXPPPXGXXXXXP 429
           G   P P PH  P       PP P  +  PPP G     P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNP--SQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +2

Query: 530 PPPPPXXXPPPPPXXXGXXXXPPPPXGGGXXPPP 631
           P P P   P  P           PP GG    PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 727 PXXXPPPPPXXXKHPPPPXXGGGXPPPPPP 816
           P   P   P   +   PP    G PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 11/37 (29%), Positives = 11/37 (29%)
 Frame = +3

Query: 705 PPPXXXXPPXXPPPPPXXXXTPPPPXXXGGXPPPPPP 815
           P      P   P   P       PP    G PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 522 GPPPPXPPXXPXPPPP 569
           GPPP  PP  P    P
Sbjct: 45  GPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 374 GGGXXXRXGGPXXGXGGGGXXPPPXXGGGGG 282
           GG      GG   G  GG        GGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGG 50



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 804 GGXXPPXXGGGGVFXXXXGGGGGXXG 727
           GG      GG  V     GGGGG  G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 452 PPPPPXGGG 426
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 778  PXXGGGXPPPPPP 816
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 934  GXPXPPPPP 960
            G P PPPPP
Sbjct: 1855 GSPEPPPPP 1863


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 527 PPPPPPXXXPPPPPXXXG 580
           PP P P   PPPPP   G
Sbjct: 338 PPKPAP---PPPPPSSSG 352



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 524 APPPPPPXXXPP 559
           APPPPPP    P
Sbjct: 342 APPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 455 PPPPPPXGGG 426
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 455  PPPPPPXGGG 426
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.160    0.616 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,308
Number of Sequences: 438
Number of extensions: 24307
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)