Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L13
         (941 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    62   2e-08
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    50   6e-05
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    44   0.006
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    39   0.21 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    35   3.4  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 62.1 bits (144), Expect = 2e-08
 Identities = 25/33 (75%), Positives = 26/33 (78%)
 Frame = +3

Query: 723 PWKTPXCXLLXRPCRLPDTCPPFSLREAWGFXI 821
           P + P C LL RPCRLPDTCPPFSLREAW F I
Sbjct: 49  PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLI 81



 Score = 33.9 bits (74), Expect = 6.0
 Identities = 27/83 (32%), Positives = 37/83 (44%)
 Frame = +1

Query: 580 KRPXTVKRPRXWRFPIGSXPLXXHXKNRXSXQRVAKPRQDYKXSQAFPPGKXPRALSXSD 759
           K+  T    R  RF IGS PL    K   +  R  + RQDYK ++ FP  + P       
Sbjct: 3   KKQSTGTSQRRCRFSIGSAPLTSITKI-DAQVRGGETRQDYKDTRRFPL-EAPSCALLFR 60

Query: 760 PAVYRIPVRLSPFGKRGAFXYXV 828
           P   R+P    PF  R A+ + +
Sbjct: 61  PC--RLPDTCPPFSLREAWRFLI 81


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = +2

Query: 746 SPXPTLPFTGYLSAFLPSGSVGLSHT 823
           SP PTLP TGYLSAFLPSGSV LSH+
Sbjct: 3   SPVPTLPLTGYLSAFLPSGSVALSHS 28


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 44.0 bits (99), Expect = 0.006
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = -2

Query: 811 PHASRREKGGQVSGKRQGRXRRXHXGVFQGETPGNXYSPVGVSPP 677
           P   + +K  QVSGKRQGR RR H G    ++P +  SPVG  PP
Sbjct: 54  PRFPKGKKAEQVSGKRQGRNRRAHEGAAGEKSPAS-LSPVGFRPP 97


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 38.7 bits (86), Expect = 0.21
 Identities = 35/105 (33%), Positives = 42/105 (40%)
 Frame = +1

Query: 409 RGKAVXXXGXLPXPRXLTXCPRSXGXGXRXQXXQRXXYGXPQNXGIXQEKTXXQKAXKRP 588
           R   +   G +P PR LT   RS G G R        Y      G   E T  +K   + 
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGER--------YRLTDGDGNFLEDT--RKTLSKE 75

Query: 589 XTVKRPRXWRFPIGSXPLXXHXKNRXSXQRVAKPRQDYKXSQAFP 723
               RPR  RF IGS PL    K+        + RQDYK  + FP
Sbjct: 76  EI--RPRRSRFSIGSAPLTSIAKSDAQISG-GETRQDYKDPRRFP 117


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +2

Query: 386 AXXNRPTPGERRXAXXAXFRFXAH 457
           A  NRPT GERR A  A FRF AH
Sbjct: 26  ALMNRPTRGERRFAYWALFRFLAH 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,307,579
Number of Sequences: 1657284
Number of extensions: 5889219
Number of successful extensions: 9272
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9260
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86549281324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)