Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L13
         (941 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           31   1.3  
01_01_0296 + 2433842-2434173,2434738-2434921                           29   4.1  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 799 RREKGGQVSGKRQGRXRRXHXGVFQGETPG 710
           RR  GG+V+G+   R RR   G ++GE  G
Sbjct: 245 RRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>01_01_0296 + 2433842-2434173,2434738-2434921
          Length = 171

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 699 VLSGFRHPLX*XSIFXMLVQGGGAYGKTPATRPFYG 592
           +LSG   P     +   +  GGG YG    TRPF G
Sbjct: 122 ILSGAHMPYHIHDLCPCVAGGGGGYGHGDLTRPFAG 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,863,877
Number of Sequences: 37544
Number of extensions: 185612
Number of successful extensions: 341
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)