Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_L12
(921 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 148 2e-34
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 122 1e-26
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 93 9e-18
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 4e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 3e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-06
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 49 2e-04
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 48 4e-04
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 46 0.002
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 44 0.005
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.089
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 5.9
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.9
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 148 bits (358), Expect = 2e-34
Identities = 72/104 (69%), Positives = 73/104 (70%)
Frame = +3
Query: 486 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRX 665
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFR
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 666 CRLPXTCPPFSLREAWGXSXTSRCRYLXXXXXXXXXWAVCPNPP 797
CRLP TCPPFSLREAW WAVC NPP
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPP 105
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 122 bits (295), Expect = 1e-26
Identities = 72/120 (60%), Positives = 77/120 (64%)
Frame = +3
Query: 318 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 497
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76
Query: 498 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRXCRLP 677
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL APSCALLF LP
Sbjct: 77 ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 93.1 bits (221), Expect = 9e-18
Identities = 44/52 (84%), Positives = 46/52 (88%)
Frame = +3
Query: 504 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 659
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLF 95
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 4e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -2
Query: 494 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 381
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 294 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 461
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 56.0 bits (129), Expect = 1e-06
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +3
Query: 393 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 566
C R Q R G +P+N I +R + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 567 IDAQVRGGETRQDYKDTRRFPLEAPSCALLF 659
I Q + +T+ +YK T FPL++PS +LLF
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLF 112
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 48.8 bits (111), Expect = 2e-04
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 607 IKIPGVSPWKLPRALSCSXPAAYRXPVRLSPFGKRGAXLIPHA--VGISVRCXSSLQA-G 777
+KI VS LP ALSCS PA R PV PF G+ + H+ GIS RC S +
Sbjct: 32 LKIITVSDESLPLALSCSNPAVSRIPV--PPFSLAGSVALSHSSHSGISARCRSFAPSWA 89
Query: 778 LXAQTPLXPDRWPYPV 825
+ P P PYPV
Sbjct: 90 VSKNPPFSPTAAPYPV 105
Score = 33.5 bits (73), Expect = 7.8
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +3
Query: 579 VRGGETRQDYK----DTRRFPLEAPSCALLFRXCRLPXTCPPFSLREAWGXSXTSRCRYL 746
VR GETRQD K PL A SC+ R+P PPFSL + S +S
Sbjct: 23 VRSGETRQDLKIITVSDESLPL-ALSCSNP-AVSRIP--VPPFSLAGSVALSHSSHSGIS 78
Query: 747 XXXXXXXXXWAVCPNPP 797
WAV NPP
Sbjct: 79 ARCRSFAPSWAVSKNPP 95
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/46 (54%), Positives = 28/46 (60%)
Frame = -3
Query: 715 PHASRREKGGQVSGKRQXRNRRAHEGASRGKRLVSL*SCRVSPPLT 578
P + +K QVSGKRQ RNRRAHEGA+ K SL PPLT
Sbjct: 54 PRFPKGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 45.6 bits (103), Expect = 0.002
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 644 VRSPVPXLPLTGXLSAFLPSGSVGL 718
+RSPVP LPLTG LSAFLPSGSV L
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVAL 25
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 96 DPDMIRYIDEFGQTTTRMQ 152
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 413 HSKAVIRLSTESGDNAGKNM 472
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 44.0 bits (99), Expect = 0.005
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +1
Query: 220 INKLTTTIAFILCFRFRVEVWEVFSALMNRPTRGERRFAYW 342
+++LT L RF V V +ALMNRPTRGERRFAYW
Sbjct: 1 MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.089
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 364 ERGSGRAPNTQTASPRALADSLMQ 293
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 5.9
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -2
Query: 503 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 381
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.9
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 254 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 90
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,220,153
Number of Sequences: 1657284
Number of extensions: 15245356
Number of successful extensions: 38417
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 36727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38393
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84441173866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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