Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L09
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.6  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   3.6  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   3.6  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    27   4.8  
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi...    26   6.3  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   6.3  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 346 TIPGISGTAPRGPILRVQGSSWNISRQPSAT*KADTPQASAT---*RSMREQRNDSSRSR 516
           TIP  S +A  GP++  Q + +     P+    +  P A A+     +     N+++ S 
Sbjct: 555 TIPAASTSATSGPVVGKQSAGYGGIYSPATHGISPQPYAGASLIPPSTGAAFNNETASSN 614

Query: 517 VKETSALSR*NRHLSP 564
             ET+AL   +R ++P
Sbjct: 615 AGETTALPYSSRFMNP 630


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 137 LEIWRIENFEPVAVPKTQFGLFYSGDS 217
           L IW I+NFE +  P +   LF+S  S
Sbjct: 561 LYIWNIKNFEAIHSPVSTLPLFHSNFS 587


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 616 SWVRRRKESRG*KPSP*PTRLKTRITMEGLISKWSTPK 729
           S VR RK SR  KP+  P +L+T +  +  I++  TPK
Sbjct: 286 SAVRFRKMSRKRKPTLLPLKLQTPVPSDIEIARSQTPK 323


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
 Frame = +3

Query: 339 TTNNSRDQRYSTERSNITSPRKFLEYFSPAI-----RYLKGGHASGFSHVTINEGTEKRL 503
           T N  +++     + N  S  K L+ F  +I     RYL  GH++  S + +   +E + 
Sbjct: 460 TLNEVKNENILLSQRNDKSFLKSLKSFLCSISKLENRYLSNGHSATLSDLLLGILSEIKY 519

Query: 504 FQI---KGKRNVRVK--QVKPTFESLNNGDCFILDVDHQIFVFV 620
           ++    K K  V  K   V    +  +N  C   ++D++I   V
Sbjct: 520 YEYLVRKNKETVEEKWENVMELVQQSDNISCIFYELDYKISTIV 563


>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
           Tom22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 745 KIPSCASESTTSISALPL*SWSLIWLATVMAFILSTPFAFS 623
           KI   A  +TT +S L       +W+ +  A +L  PF  S
Sbjct: 69  KIADGAKTATTGLSKLAQFGGKSMWVISTSALLLGVPFMMS 109


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 589 KMKQSPLFKDSNVGFTCLTRTFLLPLIWKSRFSVPSLIVT 470
           K K+  +F      F   +   +LPL+++ + ++PSL VT
Sbjct: 476 KRKRKIIFIGFGEEFLTFSENLVLPLLFQIKIALPSLAVT 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,520,421
Number of Sequences: 5004
Number of extensions: 74232
Number of successful extensions: 253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)