Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L08
         (947 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    29   0.070
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.65 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   1.1  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   3.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   8.0  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   8.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 0.070
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 191 LPYIDQGYDDPGVREAALAMVEEECRRYRPTKNY-LENAGPEP 316
           +PY+    DD G   AA AMV E    +     Y L N GPEP
Sbjct: 166 VPYLTPA-DDRGRVAAAAAMVAETASFHHDAAGYGLRNYGPEP 207


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 389 MVPSAISVA-LFPSLVVKQEFQMQNLVLVLHFQDSSLWVY 273
           ++P  + VA L   +V K +  MQNLV+  H Q    W +
Sbjct: 592 VLPDGVFVAFLLKHIVPKLQLCMQNLVINPHQQHLDAWYW 631


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
 Frame = -3

Query: 450 ALGSLILPTGGGGSSYLFIDNGSIGNLCCTLSISRCKAGV-SNAELGSGPAFSR*FFVGL 274
           A GS  LP G G S+ L   NG +  L    S++     V SN    SGP  S    +  
Sbjct: 39  ATGSNGLPAGAG-SNLLCASNGLVTTLASGSSLNGLTNNVPSNGLSSSGPFSSIGGGISA 97

Query: 273 *RLHS-----SSTMANAASLTPG---SSYPWSIYGNASTTTSPAIFYKIYN 145
            +        SS   N   LTP     S+P+++  N  ++   +  Y  Y+
Sbjct: 98  SKRQRTDDWLSSPSGNVPPLTPSPGPPSHPYTVISNGYSSPMSSGSYDPYS 148


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 249 WWKKSADAIDPQRTILKMQD 308
           WWK+     DP+ T +K  +
Sbjct: 99  WWKQLEAKYDPEHTYVKAHE 118


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 432 LPTGGGGSSYLFI 394
           LPTG  G+SY+F+
Sbjct: 209 LPTGRLGASYVFV 221


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +2

Query: 287 NYLENAGPEPSSAFETPALQREMERVQQRLPMEP 388
           NY  +  PEP S      + R  E   +  P  P
Sbjct: 215 NYSPSQSPEPESVRPLSLVVRRCEEPTEEKPWRP 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,816
Number of Sequences: 336
Number of extensions: 3638
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26685714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)