Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L08
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.72 
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    29   0.96 
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    28   2.2  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   2.9  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    27   3.9  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    27   3.9  
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.9  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 314  PSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAES 463
            PS +  +P++  ++  V  RLP  P+S  R ++P PP    + PS+ A S
Sbjct: 1041 PSPSALSPSVTPQLPPVSSRLP--PVSATRPQIPQPPPVSTALPSSSAVS 1088


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 272 YRPTKNYLENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPV 427
           ++  K+ L+  G E     E  ALQ E   V+    M PL +K  EL P P+
Sbjct: 660 FKAVKHSLKRIGDEE---IENTALQTEKIHVRDAKTMPPLLLKLSELQPEPL 708


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 546 ASEPYSNCNSKLRTLIAWCDSCA*ELSTDSAQALGSLILPTGGGGSSYLFIDN 388
           + EP   CNS  +TL  W      E     + A G +    G GG+   F+ N
Sbjct: 361 SQEPDWKCNSLTKTLPNWKTRGIPEYCAQPSMAEGMIRCKPGAGGTIGFFVAN 413


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +2

Query: 293 LENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAESVDN 472
           LEN   E     ETP+  R+     +R P +P+  +    P    G  +EP +   S   
Sbjct: 28  LENVMSEEDIEIETPSRNRKRVSTTRRTPSKPIRSQPL-TPSSSKGAGNEPKSQNSSTTR 86

Query: 473 SHAQLSHQAIRVLNLELQLEYGS 541
             A+   Q+ + L  +L   YG+
Sbjct: 87  GSAK--KQSSKGLEEKLINSYGT 107


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 239 ALAMVEEECRRYRPTKNYLENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYEL 412
           AL  + +  R     K  LE      S +F+   L  ++ R+ QRL ++   +  YE+
Sbjct: 472 ALEQLVQSIRDSEKLKERLETEQQNMSGSFQATRLTAQLSRLDQRLDLDRSFVHCYEI 529


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 182 VDALPYIDQGYDDPGVREAALAMVE 256
           +D + + D  YDDP  REAA   +E
Sbjct: 547 LDLMSWEDSVYDDPSFREAAQGSIE 571


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 161 KMAGEVVVDALPYIDQGYDDPGVREA 238
           K  G+V V  LP    G +DPGV EA
Sbjct: 183 KYQGDVKVSPLPSTLTGKEDPGVIEA 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,389
Number of Sequences: 5004
Number of extensions: 58420
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)