Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_L08
(947 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13019-8|AAC24446.2| 238|Caenorhabditis elegans Hypothetical pr... 112 4e-25
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 31 1.6
AY204183-1|AAO39187.1| 406|Caenorhabditis elegans nuclear recep... 30 2.8
AL132948-14|CAD91709.1| 399|Caenorhabditis elegans Hypothetical... 30 2.8
AL132948-13|CAD31815.2| 509|Caenorhabditis elegans Hypothetical... 30 2.8
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 3.7
U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid precur... 29 3.7
U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid precurs... 29 3.7
U40955-2|AAA81748.2| 89|Caenorhabditis elegans Hypothetical pr... 29 3.7
U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid pr... 29 3.7
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 29 4.9
Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical pr... 29 6.4
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 29 6.4
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 28 8.5
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 28 8.5
>U13019-8|AAC24446.2| 238|Caenorhabditis elegans Hypothetical
protein T12A2.7 protein.
Length = 238
Score = 112 bits (269), Expect = 4e-25
Identities = 57/159 (35%), Positives = 94/159 (59%)
Frame = +2
Query: 173 EVVVDALPYIDQGYDDPGVREAALAMVEEECRRYRPTKNYLENAGPEPSSAFETPALQRE 352
+V+VDALPY+D Y++ R+ A+ +VE EC+ +RPTKNYL + AF T + +E
Sbjct: 21 QVLVDALPYLDTEYNEAD-RQLAMKLVEHECKTFRPTKNYLTHLPVPDYDAFLTKCMLKE 79
Query: 353 MERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAESVDNSHAQLSHQAIRVLNLELQLE 532
M+R++++ M L M R ELP P + + WA+ + N+ AQ H +R +NLEL E
Sbjct: 80 MDRMKKKEEMGKLDMSRCELPAPSAVKGVDRKLWAKVLRNAKAQNEHLLMRQINLELMDE 139
Query: 533 YGSEAWRSYLNTLQALVTRAQNEHNQLRKXIGSVNWERK 649
Y +E++ ++ L+T A+ E + ++ + V+ RK
Sbjct: 140 YAAESYLQRNKVMEDLLTHAEKELRKTKEAVMEVHANRK 178
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 296 ENAGPEPSSAFETPALQRE--MERVQQRLPMEPLSMKRYELPPPPV 427
E P P+S + +P LQR+ M+R + P P S + PPPP+
Sbjct: 686 EMPAPPPAS-YISPDLQRDSSMQRSEYSRPFRPTSRPKTPPPPPPM 730
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 296 ENAGPEPSSAFETPALQRE--MERVQQRLPMEPLSMKRYELPPPPV 427
E P P+S + +P LQR+ M+R + P P S + PPPP+
Sbjct: 686 EMPAPPPAS-YISPDLQRDSSMQRSEYSRPFRPTSRPKTPPPPPPM 730
>AY204183-1|AAO39187.1| 406|Caenorhabditis elegans nuclear receptor
NHR-95 protein.
Length = 406
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 166 GRRSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL 273
G SCR C +R + WS+ C+G ++ L
Sbjct: 35 GVNSCRACAAFFRRTVNSKWSRMRCLGGSCNQISFL 70
>AL132948-14|CAD91709.1| 399|Caenorhabditis elegans Hypothetical
protein Y39B6A.17b protein.
Length = 399
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 166 GRRSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL 273
G SCR C +R + WS+ C+G ++ L
Sbjct: 28 GVNSCRACAAFFRRTVNSKWSRMRCLGGSCNQISFL 63
>AL132948-13|CAD31815.2| 509|Caenorhabditis elegans Hypothetical
protein Y39B6A.17a protein.
Length = 509
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 166 GRRSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL 273
G SCR C +R + WS+ C+G ++ L
Sbjct: 28 GVNSCRACAAFFRRTVNSKWSRMRCLGGSCNQISFL 63
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +2
Query: 212 YDDPGVREAALAMVEEECRRYRPTKNYLENAGPEPSSAFETPALQREMERVQQRLPMEPL 391
+++ +R+ A+A V + P + PS++ P +R Q + P
Sbjct: 280 HEEAELRQKAIASVAARAKSGSPRRRR------SPSASKSPPPARRRRSPSQSKSPAPKR 333
Query: 392 SMKRYELPPPPVGRMSEPSA 451
+ R + PP P R PSA
Sbjct: 334 AKSRSKSPPAPARRRRSPSA 353
>U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform a protein.
Length = 686
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 536 GSEAWRSYLNT-LQALVTRAQNEHNQLRKXIGSVNWER-KTRTNSKR 670
G+E ++S +N Q V+ + EH ++RK I +V+ ER + N K+
Sbjct: 296 GAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKK 342
>U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform b protein.
Length = 684
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 536 GSEAWRSYLNT-LQALVTRAQNEHNQLRKXIGSVNWER-KTRTNSKR 670
G+E ++S +N Q V+ + EH ++RK I +V+ ER + N K+
Sbjct: 296 GAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKK 342
>U40955-2|AAA81748.2| 89|Caenorhabditis elegans Hypothetical
protein F48B9.4 protein.
Length = 89
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 246 ANAASLTPGSSYPWSIYGNASTTTSPAIFYKIYNS 142
AN TP S YGN+ +P + Y+ YNS
Sbjct: 22 ANVVDATPRSQGNMMRYGNSLPAYAPHVLYRFYNS 56
>U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid
protein precursor protein.
Length = 680
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 536 GSEAWRSYLNT-LQALVTRAQNEHNQLRKXIGSVNWER-KTRTNSKR 670
G+E ++S +N Q V+ + EH ++RK I +V+ ER + N K+
Sbjct: 290 GAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKK 336
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 329 ETPALQREMERVQQRLP-MEPLSMKRYELPPPPVGRMSE 442
E L+ E+E QQ +P ++P + R +PPPPV R+ E
Sbjct: 774 EAEELKAELESRQQPIPPVDPNA--RLLVPPPPVARLEE 810
>Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical
protein F33H1.3 protein.
Length = 359
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 293 LENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVG---RMSEPSAWAES 463
+ AGPE ++ PA+ + +V+ +LP P+ + + P PP G S+ E
Sbjct: 145 VSTAGPERNNQLLAPAMIKR--KVEFQLPPRPVRVAGQKPPGPPCGLAPNFSDSEEEEEE 202
Query: 464 VDNSH 478
V + H
Sbjct: 203 VHDDH 207
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 28.7 bits (61), Expect = 6.4
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = +2
Query: 230 REAALAMVEEECRRYRPTKNYLENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYE 409
REA VE+E + +R GP P S A+++ +E+V+++ P P +
Sbjct: 1416 REAKKKAVEKEKKEHRKEPKKTNEPGPAPKS---EKAVEKAVEKVEKK-PKSP------Q 1465
Query: 410 LPPPPVGRMSEPSAWAESVDNSHAQLSHQA 499
PP + P E VD + S +
Sbjct: 1466 KPPAKPTAQNPPLKKTEEVDGIEREASESS 1495
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 535 RFRSMEIIPQYTSSISHKSSKRTQPVT*TNRLCELGT*NAYKQQAVR 675
+FRS + + S + K+SK+ + + +C+L N Y Q+ VR
Sbjct: 2268 KFRSKNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEYAQKKVR 2314
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 535 RFRSMEIIPQYTSSISHKSSKRTQPVT*TNRLCELGT*NAYKQQAVR 675
+FRS + + S + K+SK+ + + +C+L N Y Q+ VR
Sbjct: 2268 KFRSKNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEYAQKKVR 2314
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 535 RFRSMEIIPQYTSSISHKSSKRTQPVT*TNRLCELGT*NAYKQQAVR 675
+FRS + + S + K+SK+ + + +C+L N Y Q+ VR
Sbjct: 2268 KFRSKNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEYAQKKVR 2314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,011,234
Number of Sequences: 27780
Number of extensions: 341904
Number of successful extensions: 1225
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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