Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L08
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.0  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 677 PRTACCLYAFYVPSSQSLXVYVTGC 603
           P T C ++ F++  ++ L +  TGC
Sbjct: 208 PMTFCRVFPFHLMFNRDLIIVQTGC 232


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 677 PRTACCLYAFYVPSSQSLXVYVTGC 603
           P T C ++ F++  ++ L +  TGC
Sbjct: 208 PMTFCRVFPFHLMFNRDLIIVQTGC 232


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 377 PMEPLSMKRYELPPPPVGRMSEPSAWAESVDNSHAQLSHQAI 502
           P + +  + Y +P      MSE    ++SV+   +Q  HQ +
Sbjct: 773 PFKGMETQDYRIPEVMRRLMSEDKRLSKSVNGDQSQPPHQQL 814


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,915
Number of Sequences: 438
Number of extensions: 4256
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)