Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L06
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    28   1.6  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   3.8  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    27   3.8  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   5.0  
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    27   5.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   6.6  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    26   8.7  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 704 AENTKKIEEAQRKLAEERLAMIEEQEKWMRNDXS*KRPEKRIKRTKE 844
           A   K+ EEA++K  E+RL    EQEK  +     KR EK+ ++ +E
Sbjct: 628 ALEAKRQEEARKKREEQRLK--REQEKKQQELERQKREEKQKQKERE 672


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 701 MAENTKKIEEAQRKLAEERLAMIEEQEKWMRNDXS*KRPEKRIKRTKED 847
           M E  +  EE ++++ EE  A I E+EK +      ++ E R+K+ +++
Sbjct: 253 MLEEKRAREEEEQRIREEE-ARIAEEEKRLAEVEEARKEEARLKKKEKE 300


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 144 KIWDAQGHGVNRLEDITKVVNTRGKRADQK 233
           K++D  G+G   +E++T V+ + G+R  Q+
Sbjct: 92  KVFDKDGNGYITVEELTHVLTSLGERLSQE 121


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 314 VTFFLTWNYVLSFYQHV 264
           + FF+++NY++  YQH+
Sbjct: 460 IVFFVSYNYIIDSYQHM 476


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 707 ENTKKIEEAQRKLAEERLAMIEEQEK-WMRNDXS*KRPEKRIKRTKEDL 850
           E  KK+   +RK AE R+  +E+  K    +D   K+ EK +++ + DL
Sbjct: 61  ERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMRKCQIDL 109


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 308  FFLTWNYVLSFYQHV 264
            FFL W Y + FY+H+
Sbjct: 1315 FFLCWFYPIKFYKHI 1329


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 737 RKLAEERLAMIEEQEKWMRNDXS*KRPEKRIKR 835
           R++ E+  A +E++  W++      +P++ IKR
Sbjct: 61  REVVEDVFAKVEQEHPWVKETKLVAKPDQLIKR 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,719
Number of Sequences: 5004
Number of extensions: 35716
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)