Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_L06
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 31 1.7
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 30 3.0
04_01_0029 + 372486-373426,373533-373938,374380-374832 30 3.0
03_05_0371 + 23570246-23570359,23570499-23570575,23570600-235706... 29 4.0
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 29 4.0
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 29 5.2
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 29 5.2
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 29 6.9
03_06_0398 + 33629421-33629633,33629960-33630063,33630140-336301... 29 6.9
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 29 6.9
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 760 SDDRRTRKMDEERXKLKKTREADKEDQRRSR 852
S +RR R D +R + + +E DK+ +RRSR
Sbjct: 89 SRERRDRDRDRDRDEKDREKERDKDKERRSR 119
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 698 IMAENTKKIEEAQRKLAEERLAMIEEQEKWMRNDXS*KRPEKRIKRTK 841
++ EN +K+EEAQRK A E+ +E E+++ + K+ E ++R K
Sbjct: 235 MLEENRRKVEEAQRKEALEQ--QQKELERFLELERIQKQREDAMRRKK 280
>04_01_0029 + 372486-373426,373533-373938,374380-374832
Length = 599
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 707 ENTKKIEEAQRKLAEERLAMIEEQEKWMRNDXS*KRPEKRIKRTKEDLGRTFTAKCR 877
+N +++E AQ KL A I+ KW D R +K++KR E+ T KC+
Sbjct: 33 DNIERLEMAQIKLE----AAIKTSNKWQITDTPLLRWQKKLKRASEECDDTL-RKCK 84
>03_05_0371 +
23570246-23570359,23570499-23570575,23570600-23570675,
23570761-23570892,23570945-23571412,23571513-23571590,
23571693-23571809
Length = 353
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 707 ENTKKIEEAQRKLAEERLAMIEEQEKWMRNDXS*KRPEKRIKRTKE 844
+NT +IE+ +R+L EER A E+E+ R + +R E+ ++ +E
Sbjct: 204 DNTNQIEDLERQLQEEREAREREREERER-EKERERQEREQEKERE 248
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 766 DRRTRKMDEERXKLKKTREADKEDQRRS 849
+ R R++DEE+ +LKK ++ DK QRRS
Sbjct: 193 EERLRELDEEKEELKKYQQLDK--QRRS 218
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 728 EAQRKLAEERLAMIEEQEKWMRNDXS*KRPEKRIKRTKED 847
EA+R AEER EE+ + + +R E+R +R KE+
Sbjct: 225 EAERAAAEERARREEEEGRARAEEERRRREEERRRRRKEE 264
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +1
Query: 682 ERTRRHHG*KYQKN*RSTAQAGGREISDDRRTRKMDEERXKLKKTREADKEDQRRSRQN 858
+R + H +Y+ + G R+ ++DR + DE+ + + + D+ DQ+RSR++
Sbjct: 232 DRGSKDHD-RYRHDRSPERSRGDRQRNNDRYAQGRDEKSERYRSEVKHDEGDQKRSRRD 289
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 28.7 bits (61), Expect = 6.9
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 704 AENTKKIEEAQR--KLAEERLAMIEEQEKWMRNDXS*KRPEKRIKRTKEDLGRTFTAK 871
AE KK EE +R K EERL EE+ K K EK K+ G+ T K
Sbjct: 438 AEERKKREEEERLRKEEEERLKKEEEERKAEEAKRRKKEREKEKLLKKKQEGKLLTGK 495
>03_06_0398 +
33629421-33629633,33629960-33630063,33630140-33630194,
33630293-33630341,33630427-33630599,33630731-33630808,
33630923-33630985,33631400-33631525,33631667-33631795
Length = 329
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 748 GREISDDRRTRKMDEERXKLKKTREADKEDQRRSR 852
G + D+ +MDE K ++ +++++E RRSR
Sbjct: 186 GTHLRRDKALSQMDERELKRERRKQSNRESARRSR 220
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 766 DRRTRKMDEERXKLKKTREADKEDQRRS 849
+ R R++DEE+ ++KK ++ DK QRRS
Sbjct: 92 EERLRELDEEKEEMKKYQQLDK--QRRS 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,792,952
Number of Sequences: 37544
Number of extensions: 219596
Number of successful extensions: 660
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -