Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L06
         (927 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    24   1.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.9  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 837 VLFIRFSGLFQLXSFLI 787
           V+ + FSGLF + SFLI
Sbjct: 57  VIVLAFSGLFSVFSFLI 73


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 713 TKKIEEAQRKLAEE 754
           +KK+EE+ RKL EE
Sbjct: 374 SKKLEESMRKLDEE 387



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 749 EERLAMIEEQEKWMRNDXS*KRPEKRIKRTKE 844
           E +LA+ +EQ K  + + S ++ ++ +KRT E
Sbjct: 362 ELKLALDQEQLKSKKLEESMRKLDEEMKRTDE 393


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 63  VSLLIRNISVNTI*FLHATVST*PSLLKIWDAQGHGVNRLE 185
           + L++ N+S N +  + A +      L+I D + + ++R+E
Sbjct: 335 IRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIE 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,140
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)