Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_L01
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.41 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.54 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 801  PPPPPL--PXKXXXPXXPXGKPGXPPKXKXPXXSSP 902
            PPPPP+  P     P  P G P  PP    P  S+P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP-PPLPASSAP 1741



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +3

Query: 801  PPPPPLPXKXXXPXXPXGKPGXPPKXKXP--XXSSPPSGXSP 920
            P PPP P     P      P  PP    P    SS PS  +P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +3

Query: 801 PPPPPLPXK---XXXPXXPXGKPGXPPKXKXPXXSSPPSGXSP 920
           PPPPP P        P  P G+   PP    P  S+P +G  P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP---PPPRSAPSTGRQP 376



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 801 PPPPPLPXKXXX-PXXPXGKPGXPPKXKXPXXSSPPSGXSP 920
           P  PPLP      P  P G P  PP    P   +PP   +P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPP--LPPAAPAPPPAPAP 482


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +3

Query: 801  PPPPPLPXKXXXPXXPXGKPGXPPKXKXPXXSSPPSGXSP 920
            PP PP       P    G P  PP    P   +P +G  P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
 Frame = +3

Query: 804  PPPPLPXKXXXPXXPX--GKPGXPPKXKXPXXSSPPSGXSPXXP 929
            PP P P     P      G P  PP  + P    P  G  P  P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 801 PPPPPLPXKXXXPXXPXGKPGXPPK 875
           PPPPP+      P  P  KP  PP+
Sbjct: 419 PPPPPISSSSTTPR-PDDKPSLPPR 442


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 652 LPPXXPPPQXPPP 690
           LPP  PPP  PPP
Sbjct: 4   LPPGNPPPPPPPP 16


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
 Frame = +3

Query: 804 PPPPLPXKXXXPXXPXGK---PGXPPKXKXPXXSSPPSGXSP 920
           P  PLP +   P  P  +   PG PP    P    P  G  P
Sbjct: 99  PEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPP 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,759
Number of Sequences: 5004
Number of extensions: 15098
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)