Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_K23
(1060 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 46 7e-06
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 40 8e-04
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 30 0.039
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.27
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.53
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.83
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.4
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 24 4.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 5.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 46.4 bits (105), Expect = 7e-06
Identities = 17/28 (60%), Positives = 17/28 (60%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPPPPPPXXXXGG 648
PPPPPP PPPPPPPPP GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 39.9 bits (89), Expect = 6e-04
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPPPPPPXXXXGG 648
PPPPPP PPPPPPPP G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 33.1 bits (72), Expect = 0.068
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPP-PPPPPXXXXGGXXXXXXXXPPP 615
PPPPPP P P P PPP GG PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGG---PPPPPPPP 768
Score = 33.1 bits (72), Expect = 0.068
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPPPPPPXXXXGGXXXXXXXXPPP 615
P P PP PPPPPPPP G PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP---GVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 39.5 bits (88), Expect = 8e-04
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPPPPP 669
PPPPPP F PPPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPPPPPP 666
PPPPPP F PPPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.5 bits (63), Expect = 0.83
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 692 PPPPPPPPPXXXXGGXXXXXXXXPPPXXXKKKK 594
PP PPPPP PPP KK+K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 30.3 bits (65), Expect(2) = 0.039
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 692 PPPPPPPPPXXXXGG 648
PPPPPPPPP G
Sbjct: 945 PPPPPPPPPLVSAAG 959
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 692 PPPPPPPPPXXXXGG 648
PPPPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 23.4 bits (48), Expect(2) = 2.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 692 PPPPPPPP 669
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 22.6 bits (46), Expect(2) = 2.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 689 PPPPPPPP 666
PPPPPP P
Sbjct: 907 PPPPPPLP 914
Score = 22.2 bits (45), Expect(2) = 0.039
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 704 FXXXPPPPPP 675
F PPPPPP
Sbjct: 944 FPPPPPPPPP 953
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.27
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPP----------PPPPPPPXXXXGG 648
PPPPPP PP PPPPPPP G
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPPPPPPXXXXGGXXXXXXXXPP-PXXXKKKKXXXFFFXXXXPPP 555
PP PPP PP PP P PP P + PPP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313
Query: 554 P 552
P
Sbjct: 314 P 314
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 10/32 (31%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPP----------PPPPPP 666
PPPPPP PP PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Frame = -3
Query: 731 PPPPPPXXFFXXXP-PP-----PPPPPP 666
PPPPP P PP PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPP-----PPPP 666
PPPPPP P PP PPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPP 364
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.83
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 692 PPPPPPPPP 666
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect(2) = 0.53
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 692 PPPPPPPPP 666
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
Score = 25.8 bits (54), Expect(2) = 0.69
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPPPPP 669
PP P PPPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244
Score = 22.2 bits (45), Expect(2) = 0.53
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPPP 675
P P + PPPPPP
Sbjct: 179 PATSLPSDYNPPPPPPPPP 197
Score = 22.2 bits (45), Expect(2) = 0.69
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 692 PPPPPPPPP 666
PPPPPP P
Sbjct: 239 PPPPPPTLP 247
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.83
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 692 PPPPPPPPP 666
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 692 PPPPPPPP 669
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 689 PPPPPPPP 666
PPPPPP P
Sbjct: 5 PPPPPPAP 12
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 728 PPPPPXXFFXXXPPPPPPPP 669
PPPP PP PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 728 PPPPPXXFFXXXPPPPPPPP 669
PPPPP PPPP PP
Sbjct: 1707 PPPPPM----SVPPPPSAPP 1722
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -3
Query: 689 PPPPPPPPXXXXGG 648
PPPPPP P G
Sbjct: 240 PPPPPPRPSQPTSG 253
Score = 21.4 bits (43), Expect(2) = 4.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 704 FXXXPPPPPPPP 669
F PPPPPP
Sbjct: 234 FSSSSTPPPPPP 245
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -3
Query: 731 PPPPPPXXFFXXXPPPPPPPPP 666
PPPPP P PPPP
Sbjct: 908 PPPPPTASMTASAPAIASPPPP 929
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 692 PPPPPPPP 669
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 689 PPPPPPPP 666
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 692 PPPPPPPP 669
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 689 PPPPPPPP 666
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,280
Number of Sequences: 5004
Number of extensions: 29884
Number of successful extensions: 315
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -