Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_K22
(1128 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 36 0.059
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.9
01_05_0490 + 22672241-22674679 29 6.8
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 29 8.2
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 29 8.9
02_05_0686 - 30900748-30902167,30903442-30904742 29 8.9
01_03_0005 + 11568545-11569119,11569179-11569191 29 8.9
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 35.9 bits (79), Expect = 0.059
Identities = 21/87 (24%), Positives = 22/87 (25%)
Frame = -1
Query: 744 PPPXXXGGGXXXXXPPPPPXXXXXXXXXPXXXXXXXXXXKKKXXPPPXPXGGXXXXXXXX 565
PPP PPPPP P + PPP P G
Sbjct: 608 PPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPP 667
Query: 564 XXKPPXXXXXXYXXXXXXXXXXPPPPP 484
PP PPPPP
Sbjct: 668 PPPPPRSSSRTPTGAATSSKGPPPPPP 694
Score = 32.7 bits (71), Expect = 0.55
Identities = 20/87 (22%), Positives = 21/87 (24%)
Frame = -1
Query: 744 PPPXXXGGGXXXXXPPPPPXXXXXXXXXPXXXXXXXXXXKKKXXPPPXPXGGXXXXXXXX 565
PPP PPPPP P + PPP G
Sbjct: 607 PPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPP 666
Query: 564 XXKPPXXXXXXYXXXXXXXXXXPPPPP 484
PP PPPPP
Sbjct: 667 PPPPPPRSSSRTPTGAATSSKGPPPPP 693
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = -2
Query: 614 PPPPXPXGXGXXXXXXXXKNPPXXXXXXIXXXXXXXXXPPPPPP 483
PPPP P G PP + PPPPPP
Sbjct: 547 PPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPP 590
Score = 30.7 bits (66), Expect = 2.2
Identities = 22/90 (24%), Positives = 23/90 (25%), Gaps = 2/90 (2%)
Frame = -2
Query: 746 PPPPXXXGGGXXXXXPPXPXXXXXXXXXXXXXXXXXXXXKKKKXPPPPXPXGXGXXXXXX 567
PPPP PP P + PPPP P G G
Sbjct: 607 PPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAP-GIGNKFPAP 665
Query: 566 XXKNPPXXXXXXIXXXXXXXXX--PPPPPP 483
PP PPPPPP
Sbjct: 666 PPPPPPPRSSSRTPTGAATSSKGPPPPPPP 695
Score = 29.1 bits (62), Expect = 6.8
Identities = 22/88 (25%), Positives = 23/88 (26%)
Frame = -2
Query: 746 PPPPXXXGGGXXXXXPPXPXXXXXXXXXXXXXXXXXXXXKKKKXPPPPXPXGXGXXXXXX 567
PPPP G PP P + PPPP P
Sbjct: 548 PPPPPPPSGNKPAFSPPPP-----PPPPPPPPLPQSNYASSQPPPPPPPP----PLPNCL 598
Query: 566 XXKNPPXXXXXXIXXXXXXXXXPPPPPP 483
PP I PPPPPP
Sbjct: 599 VPSPPPPPPPPPILPNRSVPPPPPPPPP 626
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 2.9
Identities = 24/87 (27%), Positives = 24/87 (27%)
Frame = -1
Query: 744 PPPXXXGGGXXXXXPPPPPXXXXXXXXXPXXXXXXXXXXKKKXXPPPXPXGGXXXXXXXX 565
PPP GG PPPPP P PPP P GG
Sbjct: 1109 PPPPPPPGGITGV-PPPPPIGGLGGHQAPPAPPLPEGIG---GVPPPPPVGG---LGGPP 1161
Query: 564 XXKPPXXXXXXYXXXXXXXXXXPPPPP 484
PP PPPPP
Sbjct: 1162 APPPPAGFRGGTPPPNAHGGVAPPPPP 1188
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.1 bits (62), Expect = 6.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 500 PPPPPPXKXXXKKKKKKKRXG 438
PPPPPP + KKKR G
Sbjct: 513 PPPPPPLPPATAPRSKKKRSG 533
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 28.7 bits (61), Expect = 8.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 500 PPPPPPXKXXXKKKKKKK 447
PPPPPP + KKKKK
Sbjct: 39 PPPPPPQLRGGETKKKKK 56
Score = 23.8 bits (49), Expect(2) = 8.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 500 PPPPPPXKXXXKKK 459
PPPPPP K K+
Sbjct: 81 PPPPPPPKQEKAKR 94
Score = 23.4 bits (48), Expect(2) = 8.2
Identities = 14/50 (28%), Positives = 16/50 (32%)
Frame = -2
Query: 746 PPPPXXXGGGXXXXXPPXPXXXXXXXXXXXXXXXXXXXXKKKKXPPPPXP 597
PPPP GG P ++KK PPPP P
Sbjct: 41 PPPPQLRGGETKKKKKPDARTAAEAAQGLQRHEVE----RRKKPPPPPPP 86
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 28.7 bits (61), Expect = 8.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 500 PPPPPPXKXXXKKKKKKK 447
PPPPPP + ++K KKK
Sbjct: 14 PPPPPPAETPARRKGKKK 31
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 8.9
Identities = 19/73 (26%), Positives = 19/73 (26%)
Frame = -1
Query: 702 PPPPPXXXXXXXXXPXXXXXXXXXXKKKXXPPPXPXGGXXXXXXXXXXKPPXXXXXXYXX 523
PPPPP P K PPP P G PP
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP-----PP 369
Query: 522 XXXXXXXXPPPPP 484
PPPPP
Sbjct: 370 PGGKKGGPPPPPP 382
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +1
Query: 484 GGGGGGXXXXXXXXXIXXXXXXGGXXXXXXXXXXPXPXGXGGGG 615
GGGGGG GG P P G GGGG
Sbjct: 80 GGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGG 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,699,449
Number of Sequences: 37544
Number of extensions: 460116
Number of successful extensions: 3720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3318
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3409741232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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