Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K21
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.019
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.72 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   6.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -2

Query: 701 PPPX---GGGXKXPPPPXXXXKXPPPPPP 624
           PPP    GG    PPPP      PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -2

Query: 701 PPPXGGGXKXPPPPXXXXKX--PPPPPP 624
           P P  GG   PPPP        PPPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 701 PPPXGGGXKXPPPPXXXXKXPPPPPP 624
           P P       PPP       PPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 695 PXGGGXKXPPPPXXXXKXPPPPPP 624
           P G     PPPP       PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 698 PPXGGGXKXPPPPXXXXKXPPPPPP 624
           PP       PPP       PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 701 PPPXGGGXKXPPPPXXXXKXPPPPPP 624
           PPP        P P      PPPPPP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 698 PPXGGGXKXPPPPXXXXKXPPPP 630
           P  G G   PPPP    +  PPP
Sbjct: 120 PVRGVGYTAPPPPAGFGRGAPPP 142


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 625 GGGGGGFFXXXXGGGGXFXPPPXGGG 702
           G  GGGF     G GG   PPP  GG
Sbjct: 184 GHNGGGFGGFGGGSGG---PPPGPGG 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,004,057
Number of Sequences: 5004
Number of extensions: 10328
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)