Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K18
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 668 PPPPPPPPXXXG 703
           PPPPPPPP   G
Sbjct: 761 PPPPPPPPGVAG 772



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 668 PPPPPPPPXXXGG 706
           PPPPPPPP    G
Sbjct: 776 PPPPPPPPAVSAG 788



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 668 PPPPPPPPXXXGGXXF 715
           PPPPPPP    GG  +
Sbjct: 777 PPPPPPPAVSAGGSRY 792



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 669 PPPPPPPXXGXGGXXXP 719
           PPPPPPP     G   P
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668 PPPPPPPP 691
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 672 PPPPPPXXGXGGXXXP 719
           PPPPPP  G  G   P
Sbjct: 761 PPPPPPPPGVAGAGPP 776


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668 PPPPPPPP 691
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668 PPPPPPPP 691
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668 PPPPPPPP 691
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668 PPPPPPPP 691
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668 PPPPPPPP 691
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668  PPPPPPPP 691
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668 PPPPPPPP 691
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668 PPPPPPPP 691
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 668 PPPPPPPP 691
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 668  PPPPPPPPXXXGGXXFXS 721
            PPPPPPP     G  F S
Sbjct: 947  PPPPPPPLVSAAGGKFVS 964


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,383
Number of Sequences: 5004
Number of extensions: 6161
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)