Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K17
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...   142   8e-35
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    81   2e-16
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    69   7e-13
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    69   9e-13
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    68   2e-12
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    64   3e-11
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    60   4e-10
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    35   0.014
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    30   0.51 
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    27   4.8  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   4.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   8.4  

>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score =  142 bits (343), Expect = 8e-35
 Identities = 63/106 (59%), Positives = 88/106 (83%)
 Frame = +1

Query: 157 MARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVF 336
           M+R YD+RTTIFSPEGRLYQVEYA+EAI+HAG +LGI+A DGI+LAAE++ T+KLL++  
Sbjct: 1   MSRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEE 60

Query: 337 FSEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIP 474
            +EK+Y + D+M+C+VAG+T+DAN+L N  R + Q+YL  + E +P
Sbjct: 61  SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMP 106



 Score =  114 bits (274), Expect = 2e-26
 Identities = 53/105 (50%), Positives = 70/105 (66%)
 Frame = +2

Query: 479 EQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNN 658
           EQLV  +CD+KQ YTQYGG RPFGVS LY GWD   GYQL+QS+PSGNYG W+A  IG N
Sbjct: 108 EQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGN 167

Query: 659 SAAAVQV*NRSTRKMRHSGKSTSPGNQVLSKTLDMTKLTPXKVEW 793
           S +   +  +  +   +  ++++   + LSKTLD   LT  K+E+
Sbjct: 168 STSVQSLMRQEYKDDINLDEASAMAVKFLSKTLDSNSLTHEKIEF 212


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 37/99 (37%), Positives = 61/99 (61%)
 Frame = +1

Query: 169 YDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEK 348
           YD     FSPEGRL+QVEYA+EAI    T++G+   D ++L  E+R T+ L+ E    EK
Sbjct: 8   YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLM-ESHSVEK 66

Query: 349 IYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGE 465
           +++++  + C+++G+T+DA  +    R+  Q +   Y E
Sbjct: 67  LFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDE 105



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = +2

Query: 539 RPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAA 670
           RPFGV++L  G D+H G QLY S+PSG Y  ++A  IG+ S  A
Sbjct: 136 RPFGVALLIAGIDEH-GPQLYHSEPSGTYFRYEAKAIGSGSEPA 178


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 69.3 bits (162), Expect = 7e-13
 Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
 Frame = +1

Query: 157 MARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVF 336
           M  +Y    T FSP G+L Q+EYA+ A++   TS+GI ATDG++LA E++ T++L     
Sbjct: 1   MTDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGAS 60

Query: 337 FSEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQ-RYLLQYGESIP 474
             EK+  +  D+    +G+  D  VL ++ R +AQ  Y   Y E  P
Sbjct: 61  L-EKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPP 106



 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 35/62 (56%), Positives = 39/62 (62%)
 Frame = +2

Query: 485 LVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSA 664
           LV  +  V Q  TQ GG RPFGVS+L  G D+  G  LYQ DPSG Y  WKAT IG +S 
Sbjct: 110 LVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSST 168

Query: 665 AA 670
           AA
Sbjct: 169 AA 170


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 33/101 (32%), Positives = 60/101 (59%)
 Frame = +1

Query: 169 YDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEK 348
           YD   ++FSP+GRL QVEY  EA+    T++ +   + I++  ER+N  KL +   F +K
Sbjct: 4   YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNF-QK 62

Query: 349 IYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESI 471
           I  +++ +  + AG+ +DA +L ++ R+ AQ + L   + +
Sbjct: 63  IAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPV 103



 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +2

Query: 455 NMANLSLGEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGY-QLYQSDPSGNYGG 631
           N+A+    E L  ++  V+Q YTQ GG RPFGVS L  G+D      ++YQ++P+G Y  
Sbjct: 98  NLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNA 157

Query: 632 WKATCIGNNSAAA 670
           WKAT IG  S AA
Sbjct: 158 WKATAIGRASKAA 170


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 31/88 (35%), Positives = 57/88 (64%)
 Frame = +1

Query: 166 RYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSE 345
           +YD   T +SP+GRL+QVEYA+EAI     ++G+++    +L A +RN  +L     + +
Sbjct: 5   QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSS---YQK 61

Query: 346 KIYKLNDDMVCSVAGITSDANVLTNELR 429
           K+ +++D +  ++AG+  DA VL+N ++
Sbjct: 62  KLIRIDDHIGIAIAGLAPDARVLSNYMK 89



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 22/63 (34%), Positives = 36/63 (57%)
 Frame = +2

Query: 482 QLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNS 661
           +L+S + +  Q  TQ  G+RP+GV  L +G+D+  G  L +  PSG    +  T +G+ S
Sbjct: 107 RLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDES-GPHLLEFQPSGLVLEYLGTSMGSRS 165

Query: 662 AAA 670
            +A
Sbjct: 166 QSA 168


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = +1

Query: 160 ARRYDTRTTIFSPEGRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVF 336
           AR +D   T+FSPEGRLYQVEYA +A ++AG TS+G+   +   + ++++  +KL+D   
Sbjct: 4   ARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLID-AS 62

Query: 337 FSEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIP 474
             + ++ +   + C + G  +DA    +  R  A  +  + G  +P
Sbjct: 63  TVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMP 108



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +2

Query: 485 LVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIG 652
           L   + ++ Q  TQ    RP GV++  +  D   G  L++ DP+G Y G+KAT  G
Sbjct: 112 LAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAG 167


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 33/95 (34%), Positives = 52/95 (54%)
 Frame = +1

Query: 190 FSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDD 369
           FSP+GRL+Q EYA +A+ +A T +GI   DG++LA E+  T+KLL +   + +I  ++  
Sbjct: 14  FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLL-KPRVNNRIGSVDRH 72

Query: 370 MVCSVAGITSDANVLTNELRLIAQRYLLQYGESIP 474
           +  +  G   D   +    R  A  +   YG  IP
Sbjct: 73  IGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIP 107


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = +1

Query: 238 ISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDANVLT 417
           + + GT++ I      +LA + R+ N       F  +++++ DD+V   +G  +DA  L 
Sbjct: 10  VQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALV 69

Query: 418 NELR 429
             ++
Sbjct: 70  KRIQ 73


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 662 HYCYRCMLLSTPHSFHWDQTGRADNHSAYPSPYT 561
           HYC +C  +  P S+H     R  N   +  P+T
Sbjct: 400 HYCLKCFQVKPPRSYHCGACKRCINRYDHHCPWT 433


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -1

Query: 758 PESC*VLGCQGLCFCQSVSFSLYSCFKLELLQHYCYRCMLLSTPHSFHWDQTGRADNHSA 579
           P  C + GC G+ F  +      +  KLEL+  +  + + L +PH    ++  +    + 
Sbjct: 34  PFKCAIFGCGGINF-GTAEGPWNNSQKLELVLGHRLQVVALLSPHKSSHERVLKQKAETE 92

Query: 578 YPSPYTELR 552
           Y S Y   R
Sbjct: 93  YASSYANTR 101


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 268 LATDGILLAAERRNTNKLLDEVFFSE 345
           L + GIL   +R+NT  L+  V++SE
Sbjct: 6   LLSKGILSIIKRKNTGNLIPHVYYSE 31


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 425 NSFVKTLASDVIPATEQTMSSLSL*IFSEKNTSSRSLLVFLRSA-AKRIPSVAKIPSDVP 249
           NSF  TL +D +P         SL +F +  T SR L  F+R     + PS +     +P
Sbjct: 382 NSFDFTLENDQVPPRLIASECTSLEVFIQHITLSRILSHFVRKVYPVKSPSDSHCKVSLP 441

Query: 248 A 246
           A
Sbjct: 442 A 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,163
Number of Sequences: 5004
Number of extensions: 75224
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)