Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K16
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    29   0.96 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   3.9  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   5.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   5.1  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   6.8  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   9.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   9.0  

>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 455 SIVGWDVARVCTEGPEXXLSRHCQIATLVTSLASLERLRXERPSALERVRTAAGFRS 625
           +++G D   + T  PE  ++RHC I  L  SL +   +  E PSA + V   +   S
Sbjct: 229 ALMGADCVGMSTV-PEVVVARHCGIRVLAISLVTNNVVVEESPSAKDLVEVDSNVMS 284


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 365  LFPGQGSQHVGMGKKLMHLPPV-RELYELA 451
            +F GQGSQ  GMG  L    PV R++++ A
Sbjct: 1684 VFTGQGSQEQGMGMDLYASSPVARKIWDSA 1713


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 268 FRCGTFIKSAGFVQQPSQRSTFTA 197
           F  G+F K AG  ++P QRS F+A
Sbjct: 593 FSFGSFNKPAGQEEKPQQRSLFSA 616


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 260 ATEPELRWATQPYAVRPNEGDTNKARVEPSHTT 358
           ATEPE+   T+   ++ +EG +  +   PSH+T
Sbjct: 736 ATEPEVVDKTKVEKLKASEGKSTSSLSSPSHST 768


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 310  QRGRYEQGTCGALAHYRSAVSRPGL 384
            Q+GR +     +L H R+A+S PGL
Sbjct: 1191 QKGRIDNLQAQSLTHKRNAISYPGL 1215


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 308 PNEGDTNKARVEPSHTTVLLFPGQG 382
           P++GD N+AR  P    ++   G+G
Sbjct: 129 PHDGDVNRARYMPQKPEIIATMGEG 153


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 232 VQQPSQRSTFTARTPSPT 179
           ++Q SQRST  AR+P PT
Sbjct: 827 MRQVSQRSTSRARSPEPT 844


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,774
Number of Sequences: 5004
Number of extensions: 41585
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)