Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_K16
(951 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 31 1.3
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 31 1.3
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 30 2.4
08_02_0100 + 12350498-12350538,12351216-12351717 30 2.4
12_01_0799 + 7329394-7330125 29 4.1
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 29 4.1
05_01_0427 + 3374193-3374535,3374632-3374769,3375077-3375201,337... 29 7.2
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 28 9.5
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 287 TQPYAVRPNEGDTNKARVEPSHTTVLLFPGQGSQHVGM--GKKLMHLPPVR 433
TQP+A R + ++ EPS +T + P GS HV + G KL+ +R
Sbjct: 9 TQPHASRKQQSVSSDVHTEPSTSTSIQQPCLGSVHVNLFHGWKLLRAHALR 59
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = +2
Query: 230 DEASAFNEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHTTVLLFPGQGSQHVGMGKK 409
+ ++A G ++E +L ++ Y + P+ D K ++P+ + P S V +
Sbjct: 642 EPSNACGNGKSSEDDLNECSREYRL-PHSNDGTKLSIDPNDLRTISLPEGQSPEVYLPGL 700
Query: 410 LMHLPPVR 433
++HL PV+
Sbjct: 701 VIHLVPVK 708
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 30.3 bits (65), Expect = 2.4
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -3
Query: 502 FRSLSANSSHIPSNNARG*FVEFSYWGQMH*FLAHSNMLRAL-AWKQQNGSVRGLHTCLV 326
+ + NSS + + NA G VE +Y + LRAL ++ N + L +
Sbjct: 500 YAMVKTNSSPLLTINAFGCVVEAAYIAVYLVYAPRPARLRALTSFLLLNVAAFSLVVVVT 559
Query: 325 RIALVGPHRIRLSGPTQLRFRCGTFI 248
A+ PHR+R+ G L F F+
Sbjct: 560 VAAVAQPHRVRVLGSICLAFSMAVFV 585
>08_02_0100 + 12350498-12350538,12351216-12351717
Length = 180
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -3
Query: 370 KQQNGSVRGLHTCLVRIALVGPHRIR----LSGPTQLRFRCGTFIKS-AGFVQQPSQRST 206
++Q L CL+ +AL G HR++ LS P F+C +S + + +++
Sbjct: 84 RRQRSEEENLALCLLMLALGGHHRVQAPPPLSAPVGAEFKCSVCGRSFSSYQALGGHKTS 143
Query: 205 FTARTPSPTTS 173
+ P+P S
Sbjct: 144 HRFKLPTPPAS 154
>12_01_0799 + 7329394-7330125
Length = 243
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 248 NEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHTTVLL 367
N +AT P L QP A P DT+ +++ S+TT++L
Sbjct: 201 NMSSATSPSL----QPAAESPQSSDTSTSQIASSYTTLIL 236
>03_03_0105 +
14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 310 GPHRIRLSGPTQLRFRCGTFIKSAGFVQQPSQRSTF 203
GP LSGP + F G K AGF+ P + F
Sbjct: 173 GPLNTFLSGPLERGFASGPLDKGAGFMSGPLDKGVF 208
>05_01_0427 +
3374193-3374535,3374632-3374769,3375077-3375201,
3375776-3376045,3376125-3376255,3377005-3377212,
3377301-3377366,3377456-3377533,3378426-3378482
Length = 471
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Frame = +2
Query: 206 GTPLRRLLDEASAFNEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHTTVLLFPGQGS 385
GT RR + + E W Q R + A EPS + P
Sbjct: 84 GTLARRPIHPPQPHSTAPRIGRESSWIAQRKVDRLRKATLRDAEDEPSTAAAMPTPSDKK 143
Query: 386 QHVGMGKKLMHL--PPV--RELYELASSIVGWDVA 478
+GM + ++ + PP + + L +++ WD A
Sbjct: 144 MVLGMSRSIVRVSSPPTEGKFISPLTGTVISWDGA 178
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 28.3 bits (60), Expect = 9.5
Identities = 17/87 (19%), Positives = 42/87 (48%)
Frame = +2
Query: 206 GTPLRRLLDEASAFNEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHTTVLLFPGQGS 385
G+P+++L + S +G +T PE+ + P + + ++ +++ + P
Sbjct: 54 GSPMQKLQQQFSKILKGFSTSPEVSGSYNPEVLTTQKRQWSRFQLKSLGNRCIREP---- 109
Query: 386 QHVGMGKKLMHLPPVRELYELASSIVG 466
H+ ++ LPP +++EL + +G
Sbjct: 110 SHLFESIVIVGLPPQADIHELENIALG 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,990
Number of Sequences: 37544
Number of extensions: 320466
Number of successful extensions: 907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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