Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K16
         (951 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   2.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   5.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   9.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 280 LGHSAVCGAAQRGRYEQGTCGALA 351
           L +S++ G  +RG+YE+ T G ++
Sbjct: 600 LPYSSLYGRFKRGKYEEPTVGEIS 623


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 389 HVGMGKKLMHLPPVRELYEL--ASSIVGWDVARVCTEGPEXXLSRHCQIATLVTSLAS 556
           H G G  ++ +PP R+L  L   +++V      + +E  E  L    ++  L  SL +
Sbjct: 85  HTGFGGSIITIPPTRKLPPLHPHTAMVTHLPQTLTSENVEILLEHSSKLVELFLSLGA 142


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 19/70 (27%), Positives = 24/70 (34%)
 Frame = +2

Query: 224 LLDEASAFNEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHTTVLLFPGQGSQHVGMG 403
           LL   S F  G   E    +A   YA++ NE   N        T+           V   
Sbjct: 517 LLVITSTFGNGDPPENGEAFAQNLYAMKMNETYINSGNKISLATSKSFIKANSQTEVSNS 576

Query: 404 KKLMHLPPVR 433
           KKL  L  +R
Sbjct: 577 KKLDRLDSLR 586


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 265 RCGTFIKSAGF 233
           +CGTF+ S GF
Sbjct: 68  KCGTFLGSGGF 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,234
Number of Sequences: 438
Number of extensions: 2740
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)