Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K13
         (962 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.25 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   2.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   9.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 635 SHVLSCVIXLILWITVLPPLSELIPLAA 552
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 656 GXLXAXCSHVL-SCVIXLILWITVLPPLSELIPL 558
           G   + CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +2

Query: 734 RSSQRWXNPQDYKDTRLXPGSSLXRSPVPTLPFTDTAAXSFGS 862
           R S  + NP  +   R    +   R P+  LPF D      G+
Sbjct: 405 RDSAIYPNPDSFDPERFDQDAMASRHPMHYLPFGDGPRNCIGA 447


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 731 DFCDARSGGRSLWKTPAT 678
           D C   SGG  LW+ P T
Sbjct: 343 DACQMDSGGPVLWQNPRT 360


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 635 SHVLSCVIXLILWITVLPPLSELIPL 558
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 635 SHVLSCVIXLILWITVLPPLSELIPL 558
           S ++S  +  +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 635 SHVLSCVIXLILWITVLPPLSELIPL 558
           S ++S  +  +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 635 SHVLSCVIXLILWITVLPPLSELIPL 558
           S +LS  +  +L   ++PP S  +PL
Sbjct: 273 SILLSLTVFFLLLAEIIPPTSLTVPL 298


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 886 YAXLXEAHASEGTGGSIRKRQGRN 815
           Y    E+HA   TGGS    +G+N
Sbjct: 126 YYTTNESHACLSTGGSCYWPRGKN 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,340
Number of Sequences: 438
Number of extensions: 3927
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)