Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K12
         (959 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   4.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   7.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   7.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   9.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 805 KAPRFPKEKGGQVSGXRQGRNRRAH 731
           K P+  K +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 831 RMEPTGGYEKRHASRRRKADRY 766
           + +PTG Y++ +   R K + Y
Sbjct: 107 KYDPTGAYKQHYLQNRVKEESY 128


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 831 RMEPTGGYEKRHASRRRKADRY 766
           + +PTG Y++ +   R K + Y
Sbjct: 107 KYDPTGAYKQHYLQNRVKEESY 128


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 699 DTRRFPLKAPSCALLFRPCR 758
           + R FP+   SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,755
Number of Sequences: 438
Number of extensions: 2308
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)