Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K10
         (1000 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.44 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   4.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 590 GGXPGGXGG*XGGXGGG 640
           GG PGG GG  GG GGG
Sbjct: 241 GGGPGGFGGGLGGFGGG 257



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 593 GXPGGXGG*XGGXGGG 640
           G PGG GG  GG GGG
Sbjct: 235 GGPGGFGGGPGGFGGG 250



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 590 GGXPGGXGG*XGGXGGG 640
           GG PGG  G  GG GGG
Sbjct: 227 GGGPGGFEGGPGGFGGG 243


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 304 PTXPXPFPTPFXAXXPPXPP 245
           P  P P PTP     PP PP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPP 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,062,955
Number of Sequences: 5004
Number of extensions: 8559
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)