Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K10
         (1000 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.9  
Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical p...    28   9.1  
Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical p...    28   9.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   9.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   9.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   9.1  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 278 PVXGXXXPXXTLXGXAPPXXPXPPPXGGXXSP 183
           P+ G   P     G  PP  P PPP G    P
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 278 PVXGXXXPXXTLXGXAPPXXPXPPPXGGXXSP 183
           P+ G   P     G  PP  P PPP G    P
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 278 PVXGXXXPXXTLXGXAPPXXPXPPPXGGXXSP 183
           P+ G   P     G  PP  P PPP G    P
Sbjct: 336 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 367


>Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical
           protein F32D8.7b protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = -3

Query: 290 PFPYPVXGXXXPXXTLXGXAPPXXPXPPPXGGXXSP 183
           P P P      P  T     PP  P PPP     SP
Sbjct: 223 PTPAPTLAPFRPRPTTRRLPPPTTPPPPPPPPAPSP 258


>Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical
           protein F32D8.7a protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = -3

Query: 290 PFPYPVXGXXXPXXTLXGXAPPXXPXPPPXGGXXSP 183
           P P P      P  T     PP  P PPP     SP
Sbjct: 221 PTPAPTLAPFRPRPTTRRLPPPTTPPPPPPPPAPSP 256


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = -3

Query: 290 PFPYPVXGXXXPXXTLXGXAPPXX-PXPPPXGGXXSP 183
           P P P  G   P  T     PP   P PPP GG   P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = -3

Query: 290 PFPYPVXGXXXPXXTLXGXAPPXX-PXPPPXGGXXSP 183
           P P P  G   P  T     PP   P PPP GG   P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = -3

Query: 290 PFPYPVXGXXXPXXTLXGXAPPXX-PXPPPXGGXXSP 183
           P P P  G   P  T     PP   P PPP GG   P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 590 GGXPGGXG-G*XGGXGGGG 643
           GG PGG G G  GG GGGG
Sbjct: 141 GGGPGGYGMGGYGGGGGGG 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,119,825
Number of Sequences: 27780
Number of extensions: 99683
Number of successful extensions: 570
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2615559500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)