Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_K09
(946 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.019
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.044
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.10
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.24
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.019
Identities = 26/110 (23%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Frame = +1
Query: 430 SXXRPGPPPXGXNGXILRXXPHGPPXPXPPX---PGDTXARXXXAPXPXGXXXPXXXAGX 600
S P P P NG + P+ PP P P P P P A
Sbjct: 249 SAPAPPPIPPPSNGTV-SSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAAN 307
Query: 601 PPXKPKGXXPXPKTXXXPPQXGXTPXXPXPGXPPPQXGXPKXKTPXNPXG 750
P P + PP + P PPP P P G
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Score = 34.7 bits (76), Expect = 0.019
Identities = 29/121 (23%), Positives = 32/121 (26%), Gaps = 2/121 (1%)
Frame = +1
Query: 394 RGXXXXGXGXG*SXXRPGPPPXGXNGX-ILRXXPHGPPXPXPPXPGDTXARXXXAPXPXG 570
RG G G S P PPP N + P G P PP P + P
Sbjct: 322 RGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
Query: 571 XXXPXXXAGXPPXKPKGXXPXPKTXXXPPQXGXTPXXPXPGXPP-PQXGXPKXKTPXNPX 747
PP P P + P P PP P P P
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM 441
Query: 748 G 750
G
Sbjct: 442 G 442
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/53 (26%), Positives = 15/53 (28%)
Frame = +2
Query: 554 PPXRXAXXXPPXXPGXPPXNQKAXXPPQKPXXXPPXXXXXRXXPPRGXPPPXA 712
P A PP P P + P PP PP P P A
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIA 276
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.044
Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Frame = +1
Query: 499 PPXPXPPXPGDTXARXXXAPXPXGXXXPXXXAGXPP-XKP-KGXXPXPKTXXXPPQXGXT 672
P PP P + A P P +G PP KP G P P PP
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV--PK 1202
Query: 673 PXXPXPGXPPPQXGXP 720
P P PPP P
Sbjct: 1203 PSVGVPPVPPPSTAPP 1218
Score = 31.1 bits (67), Expect = 0.24
Identities = 23/97 (23%), Positives = 23/97 (23%)
Frame = +1
Query: 445 GPPPXGXNGXILRXXPHGPPXPXPPXPGDTXARXXXAPXPXGXXXPXXXAGXPPXKPKGX 624
G PP P P PP P P P G PP P
Sbjct: 1157 GAPPVPKPSVAAPPVP-APSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST 1215
Query: 625 XPXPKTXXXPPQXGXTPXXPXPGXPPPQXGXPKXKTP 735
P T P P P P P TP
Sbjct: 1216 APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/77 (24%), Positives = 20/77 (25%)
Frame = +1
Query: 499 PPXPXPPXPGDTXARXXXAPXPXGXXXPXXXAGXPPXKPKGXXPXPKTXXXPPQXGXTPX 678
PP P + AP P P P G P PK P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPV-PKPS 1108
Query: 679 XPXPGXPPPQXGXPKXK 729
P P P P K
Sbjct: 1109 VAVPPVPAPSGAPPVPK 1125
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.10
Identities = 21/82 (25%), Positives = 24/82 (29%)
Frame = +1
Query: 499 PPXPXPPXPGDTXARXXXAPXPXGXXXPXXXAGXPPXKPKGXXPXPKTXXXPPQXGXTPX 678
PP PP P AP P + PP +P P + P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS--APSLPSAVPP 196
Query: 679 XPXPGXPPPQXGXPKXKTPXNP 744
P PPP P T P
Sbjct: 197 MPPKVPPPPLSQAPVANTSSRP 218
Score = 30.3 bits (65), Expect = 0.41
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = +2
Query: 581 PPXXPGXPPXNQKAXXPPQKPXXXPPXXXXXRXXPPRGXPPPXAXTPKXKPXXTXXGXNP 760
PP PP Q A P + P P PP+ PPP + P P
Sbjct: 165 PPIPSSLPPPAQPAA-PVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAP 223
Query: 761 P 763
P
Sbjct: 224 P 224
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.24
Identities = 16/59 (27%), Positives = 20/59 (33%)
Frame = +1
Query: 568 GXXXPXXXAGXPPXKPKGXXPXPKTXXXPPQXGXTPXXPXPGXPPPQXGXPKXKTPXNP 744
G P PP +P+ P + PP + P P PP G P P P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMS-VPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 581 PPXXPGXPPXNQKAXXPPQKPXXXPPXXXXXRXXPPRGXPPPXAXTPKXKP 733
P PP ++ PPQ PP PP PP A P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPP-PPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/53 (26%), Positives = 14/53 (26%)
Frame = +1
Query: 562 PXGXXXPXXXAGXPPXKPKGXXPXPKTXXXPPQXGXTPXXPXPGXPPPQXGXP 720
P P A PP P P P P P P P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 825 PXPRAXXTXXXNPXPKXXGPXXXPPPGSXTPAXPXPXP 938
P P P P GP PPP A P P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/67 (25%), Positives = 18/67 (26%)
Frame = +1
Query: 508 PXPPXPGDTXARXXXAPXPXGXXXPXXXAGXPPXKPKGXXPXPKTXXXPPQXGXTPXXPX 687
P PP P AP P P PP P G PP +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 688 PGXPPPQ 708
P PQ
Sbjct: 792 YYAPAPQ 798
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 867 PKXXGPXXXPPPGSXTPAXPXPXP 938
P P PPPG P+ P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 490 PHGPPXPXPPXPGDTXARXXXAPXPXG 570
P G P P PP PG P P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.149 0.523
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,470
Number of Sequences: 5004
Number of extensions: 19528
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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